View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9504_high_25 (Length: 266)
Name: NF9504_high_25
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9504_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 20701122 - 20701369
Alignment:
| Q |
1 |
ctctttcacagttgagtttaccacctggtttcagattcttccccactgatgaggagcttcttgttcagtatctatgtcgtaaagttgcaggacatcattt |
100 |
Q |
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| T |
20701122 |
ctctttcacagttgagtttaccacctggtttcagattcttccccactgatgaggagcttcttgttcaatatctatgtcgtaaagttgcaggacatcattt |
20701221 |
T |
|
| Q |
101 |
ttctttgccaattattgctgaaattgatttgtataaatttgatccttgggttcttccaggtaattatctatcaccaatgtttatttcaagttttaggttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20701222 |
ttctttgccaattattgctgaaattgatttgtataaatttgatccttgggttcttccaggtaattatctatcaccaatgtttatttcaagttttaggttg |
20701321 |
T |
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| Q |
201 |
caattgtagaatttttcatgtctttcaattttaaatatatgtcagaat |
248 |
Q |
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| T |
20701322 |
caattgtagaatttttcatgtctttcaattttaaatatatgttagaat |
20701369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 163
Target Start/End: Original strand, 33727567 - 33727723
Alignment:
| Q |
7 |
cacagttgagtttaccacctggtttcagattcttccccactgatgaggagcttcttgttcagtatctatgtcgtaaagttgcaggacatcatttttcttt |
106 |
Q |
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|||| ||||||||||| |||||||| ||||| | |||||||||||| |||||||||||||| ||||||||||| ||||| || || |||||||||||| | |
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| T |
33727567 |
cacaattgagtttacctcctggttttagattttaccccactgatgaagagcttcttgttcaatatctatgtcgcaaagtagctggtcatcatttttctct |
33727666 |
T |
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| Q |
107 |
gccaattattgctgaaattgatttgtataaatttgatccttgggttcttccaggtaa |
163 |
Q |
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| T |
33727667 |
tcaaatcattgctgaaattgatctctacaaattcgacccatggattcttccaagtaa |
33727723 |
T |
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