View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9504_high_3 (Length: 597)
Name: NF9504_high_3
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9504_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 19 - 587
Target Start/End: Original strand, 49274890 - 49275457
Alignment:
| Q |
19 |
atcatatgtcatatctcttgattccttttaattgaaaaaccaagaccggcacaaacgtagaaacacaaattatagcatacatctaaaccaacttacaaat |
118 |
Q |
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| T |
49274890 |
atcatatgtcatatctcttgattccttttaattgaaaaaccaagaccggcacaaacgtagaaacacaaattatagcatacatctaaaccaacttacaaat |
49274989 |
T |
|
| Q |
119 |
atcaggatggctgaaccaatacaccatatatagcgaattcaattaatggaaagtgaaaagttcaatggccttatggccctaacttaggacagttaaaaat |
218 |
Q |
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| T |
49274990 |
atcaggatggctgaaccaatacaccatatatagcgaattcaattaatggaaagtgaaaagttcaatgggcttatggccctaacttaggacagttaaaaat |
49275089 |
T |
|
| Q |
219 |
attcaaaaacaggtaaaaggctgaattttcttcaatcatttagtcacaaagctgcaagtaagatggttatcgaagtttgcaaattttacttatgagttta |
318 |
Q |
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| T |
49275090 |
attcaaaaacaggtacaaggctgaattttcttcaatcatttagtcacaaagctgcaagtaagatggttatcgaagtttgcaaattttacttatgagttta |
49275189 |
T |
|
| Q |
319 |
aagctacatattcatgtcttcttgatttggtacgtacttgcattagtacttgtcaattttataagaaaatttatagttgaattgatttaataattacata |
418 |
Q |
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| T |
49275190 |
aagctacatattcatgtcttcttgatttggtacgtacttgcattagtacttgtcaattttataagaaaatttatagttgaactgatttaataattacata |
49275289 |
T |
|
| Q |
419 |
caaaacatgannnnnnnnnagtttcaaattaaacatgtaactcactgaaatagtagttagaagcaaatgtacaatcaataatttactttcggtaaactta |
518 |
Q |
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| T |
49275290 |
caaaacatga-ttttttttagtttcaaattaaacatgtaactcactgaaagagtagttataagcaaatgtacaatcaataatttactttcggtaaactta |
49275388 |
T |
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| Q |
519 |
aacactgctttactaaaatcacaatttacaatgttaggaaagcagatgtttctcaaaggcacgtctctg |
587 |
Q |
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| T |
49275389 |
aacactgctttactaaaatcacaatttacaatgttaggaaagcagatgttcctcaaaggcacgtctctg |
49275457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 484 - 567
Target Start/End: Original strand, 49278835 - 49278932
Alignment:
| Q |
484 |
aatgtacaatcaataatttactttcggtaaacttaaaca---ctgctttactaaa-----------atcacaatttacaatgttaggaaagcagatgt |
567 |
Q |
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| T |
49278835 |
aatgtacaatcaataatttactttcggtaaccttaaacagttctgctttaataaatattgattaaaatcacaatttacaatgttaggaaagcagatgt |
49278932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 32133154 - 32133231
Alignment:
| Q |
19 |
atcatatgtcatatctcttgattccttttaattgaaaaaccaagaccggcacaaacgtagaaacacaaattatagcata |
97 |
Q |
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| T |
32133154 |
atcatatgtcatatctcttgatttc-tgtaattgaaaatcccagacctgcacaaacgtacaaagactaattataacata |
32133231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 32133270 - 32133337
Alignment:
| Q |
157 |
tcaattaatggaaagtgaaaagttcaatggcctt--atggccctaactt-aggacagttaaaaatatt |
221 |
Q |
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| T |
32133270 |
tcaattaatgcagagtgaaaaatgcaatggccttaaatggccctaacttaaggacaggtaaaaatatt |
32133337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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