View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9504_low_10 (Length: 538)
Name: NF9504_low_10
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9504_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 458; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 20 - 523
Target Start/End: Original strand, 5396197 - 5396697
Alignment:
| Q |
20 |
ccttaccctggtccaattgtccacccttacctttggactggctcaaaaagatcaacatccactttattattatcagcacaaaaaacaaccacgtctaagg |
119 |
Q |
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| T |
5396197 |
ccttaccctggtccaattgtccacccttacctttggacgggctcaaaaagatcaacatccactttat---tatcagcacaaaaaacaaccacgtctaagg |
5396293 |
T |
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| Q |
120 |
gtccctaaccctggtccctgacaaataattgctatgaaataattcaacagttggtagacatgaaagaaaagttggtacactaagcaccacattgaacaaa |
219 |
Q |
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| T |
5396294 |
gtccctaatcctggtccctgacaaataattgctatgaaataattcaacagttggtagacatgaaagaaaagttggtacactaagcaccacattgaacaaa |
5396393 |
T |
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| Q |
220 |
gtttgaaaataattgacaagaaggaagttgataccgataagagagtgtagacgacgcatattcaactgcaaatggaagcagacaagatttatggtccgac |
319 |
Q |
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| T |
5396394 |
gtttgaaaataattgacaagaaggaagttgataccgataagagaatgtagacgacgcatattcaactgcaaatggaagcagacaagatttatggtccgac |
5396493 |
T |
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| Q |
320 |
gaagatagtactaaaagattgtttgtcgtatgttataaacaaggttgaatacttacattttgaaccctaatcgtcaactgaaaacgaattcaagctataa |
419 |
Q |
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| T |
5396494 |
gaagatagtactaaaagattgcttgtcgtatgttgtaaacaaggttgaatacttacattttgaaccctaatcatcaactgaaaacgaattcaagctataa |
5396593 |
T |
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| Q |
420 |
aaatataagtgtatcttccatgcttatttttctttaaatttcaacaatgtagtcacatttcaattctaagttattttctggtatgaacgtttttgctgct |
519 |
Q |
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| T |
5396594 |
gaatataagtgtatcttccatgcttatttttctttaaatttcaacaatgtagtcacatttcaattctaagttattttctggtgtgaacgtttttgctgct |
5396693 |
T |
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| Q |
520 |
gtgt |
523 |
Q |
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|||| |
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| T |
5396694 |
gtgt |
5396697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 156 - 346
Target Start/End: Original strand, 5392826 - 5393014
Alignment:
| Q |
156 |
aaataattcaacagttggtagacat--gaaagaaaagttggtacactaagcaccacattgaacaaagtttgaaaataattgacaagaaggaagttgatac |
253 |
Q |
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| T |
5392826 |
aaataattcaacaattggtcgacatatgaaagaaaagtcggtacattaagcaccgcattgaacaaagtttgaacttatttgac---aaggaagttgacac |
5392922 |
T |
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| Q |
254 |
cgataagagagtgtagacgacgcatattcaactgcaaatggaagcagacaagatttatggtccgacgaagatagtactaaaagattgtttgtc |
346 |
Q |
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| T |
5392923 |
taataagagagtgtagacgacgcatatt-aaccgtcaatggaagcaaacaagatttattgtttgacaaaaatagtactgaaagattgcttgtc |
5393014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 5392309 - 5392378
Alignment:
| Q |
20 |
ccttaccctggtccaattgtccacccttacctttggactggctcaaaaagatcaacatccactttattat |
89 |
Q |
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| T |
5392309 |
ccttaccccgatccaattgtccacccttacctttggaccggctcaaaaaggatgacatccactttattat |
5392378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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