View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9504_low_13 (Length: 468)
Name: NF9504_low_13
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9504_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 14 - 453
Target Start/End: Complemental strand, 45346562 - 45346128
Alignment:
| Q |
14 |
agagcattaaaattgatgttaaaaaccagtagctttgatgttgaaattgcctggtatttgaagtatgtatgtatggattctgcaatacttgctatgtttt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45346562 |
agagcattaaaattgatgttaaaaaccagtagctttgatgttgaaattgcctggtatttgaagtatgtatg----gattctgcaatacttgctatgtttt |
45346467 |
T |
|
| Q |
114 |
aaatggtatgtgtttatatgatttcgtgagtgttgattaaatttattgcgaattaatgttgagtttgatgcgtataagtggtgggaacaagtcatttagc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45346466 |
aaatggtatgtgtttatatgatttcgtgagtgttgattaaatttattgcgaattaatgttgagtttgatgcgtataagtggtgggaacaagtcatttagc |
45346367 |
T |
|
| Q |
214 |
cattgaatccttaaaaatgtcaaataacagccgttaggccatttctcaactttctgcacaaacgttctttacaattctaattcttttgcattcttaaaag |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45346366 |
cattgaatccttaaaaatgtcaaataacagccgttaggccatttctcaactttctgcacaaacgttctttacaattctaattcttttgcattctt-aaag |
45346268 |
T |
|
| Q |
314 |
atttttagtgtattgaaatgacttggaacttcttagatgagaatacgaatcctatttgaatgtatgatgtgatggattccctattgtgtggattgtactt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45346267 |
atttttagtgtattgaaatgacttggaacttcttagatgagaatacgaatcctatttgaatgtatgatgtgatggattccctattgtgtggattgtactt |
45346168 |
T |
|
| Q |
414 |
gtaattatcttcatgtgcataaactattgtgatttgtttt |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45346167 |
gtaattatcttcatgtgcataaactattgtgatttgtttt |
45346128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University