View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9504_low_15 (Length: 464)

Name: NF9504_low_15
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9504_low_15
NF9504_low_15
[»] chr2 (3 HSPs)
chr2 (19-453)||(9626564-9627009)
chr2 (47-78)||(44605421-44605452)
chr2 (54-86)||(12052236-12052268)
[»] scaffold0057 (4 HSPs)
scaffold0057 (128-227)||(50482-50581)
scaffold0057 (140-227)||(29883-29970)
scaffold0057 (37-86)||(30049-30098)
scaffold0057 (26-86)||(50645-50704)
[»] chr8 (1 HSPs)
chr8 (49-86)||(5307061-5307098)
[»] chr4 (4 HSPs)
chr4 (32-92)||(18513243-18513306)
chr4 (49-91)||(43188607-43188650)
chr4 (54-91)||(25950570-25950607)
chr4 (47-86)||(5654610-5654650)
[»] chr6 (2 HSPs)
chr6 (31-79)||(34547207-34547257)
chr6 (47-79)||(13815058-13815090)
[»] chr1 (1 HSPs)
chr1 (47-81)||(498416-498450)
[»] chr7 (2 HSPs)
chr7 (37-74)||(6824230-6824269)
chr7 (36-87)||(26870490-26870542)
[»] chr3 (3 HSPs)
chr3 (30-86)||(19323448-19323507)
chr3 (47-86)||(32166202-32166242)
chr3 (30-86)||(35990525-35990584)


Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 453
Target Start/End: Complemental strand, 9627009 - 9626564
Alignment:
Q  19 atgttgatatccgacactgacacatgtgtacattcaattatgtcatttttcaaattattatcagtgtc-------------tgtgtcacattcatgtttg 105  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||| ||||||    
T  9627009 atgttgatatccgacaccgacacatgtgtacattcaattatgtcatttttcaaattattatcagtgtcgacgttcggtgtctgtgtcacattcgtgtttg 9626910  T
Q  106 tgtgtgtgcttcatagtcactaactgcatctaattaatttaatatctcaatcaaattattatgaaagatgatgtgtcaatgtcgtgtctaatggttgtat 205  Q
    ||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9626909 tgtgtg--cttcatagtcactaactgcatctaattaatttagtatctcaatcaaattattatgaaagatgatgtgtcaatgtcgtgtctaatggttgtat 9626812  T
Q  206 caatgtcggtgtttcatagaatgtcactaatttttcattcccctttatattatcccttagattgtatcaatagatggaaaattctggacatgccattgac 305  Q
    ||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9626811 caatgtcggtgcttcatagaatgtcgctgatttttcattcccctttatattatcccttagattgtatcaatagatggaaaattctggacatgccattgac 9626712  T
Q  306 aagaaccagtggttgtgtttgtcacttgacattgcttatttgtgggccagtttctccatatttctggagaggatttatctatgagctgaaatggtgacca 405  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9626711 aagaaccagtggttgtgtttgtcacttgactttgcttatttgtgggccagtttctccatatttctggagaggatttatttatgagctgaaatggtgacca 9626612  T
Q  406 ccgaccacaagctcttcaactttttctccttcttcatagctgagtatt 453  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9626611 ccgaccacaagctcttcaactttttctccttcttcatagctgaatatt 9626564  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 78
Target Start/End: Complemental strand, 44605452 - 44605421
Alignment:
Q  47 tacattcaattatgtcatttttcaaattatta 78  Q
    ||||||||||||||||||||||||||||||||    
T  44605452 tacattcaattatgtcatttttcaaattatta 44605421  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 12052268 - 12052236
Alignment:
Q  54 aattatgtcatttttcaaattattatcagtgtc 86  Q
    |||||||||| ||||||||||||||||||||||    
T  12052268 aattatgtcaattttcaaattattatcagtgtc 12052236  T

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Target: scaffold0057 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 50581 - 50482
Alignment:
Q  128 actgcatctaattaatttaatatctcaatcaaattattatgaaagatgatgtgtcaatgtcgtgtctaatggttgtatcaatgtcggtgtttcatagaat 227  Q
    ||||||||||||||||||| ||||||||||||||||||||||  || ||||||||||| |||| |||||||| ||||||| |||| |||  |||||||||    
T  50581 actgcatctaattaatttagtatctcaatcaaattattatgagtgacgatgtgtcaatatcgtatctaatggctgtatcagtgtcagtgcatcatagaat 50482  T

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Target: scaffold0057; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 140 - 227
Target Start/End: Complemental strand, 29970 - 29883
Alignment:
Q  140 taatttaatatctcaatcaaattattatgaaagatgatgtgtcaatgtcgtgtctaatggttgtatcaatgtcggtgtttcatagaat 227  Q
    ||||||| |||||||||||| ||||||| |  |||||||||||||| || |||||||||||||||||| |||| ||| ||||||||||    
T  29970 taatttagtatctcaatcaagttattattagggatgatgtgtcaatatcatgtctaatggttgtatcagtgtcagtgcttcatagaat 29883  T

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Target: scaffold0057; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 30098 - 30049
Alignment:
Q  37 gacacatgtgtacattcaattatgtcatttttcaaattattatcagtgtc 86  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30098 gacacatgtgtacattcaattatgtcatttttcaaactattatcagtgtc 30049  T

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Target: scaffold0057; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 50704 - 50645
Alignment:
Q  26 tatccgacactgacacatgtgtacattcaattatgtcatttttcaaattattatcagtgtc 86  Q
    |||| ||||| ||||||||||  ||||||||||||||| ||||||||||||||||||||||    
T  50704 tatctgacaccgacacatgtgagcattcaattatgtca-ttttcaaattattatcagtgtc 50645  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 5307098 - 5307061
Alignment:
Q  49 cattcaattatgtcatttttcaaattattatcagtgtc 86  Q
    |||| |||||||||||||||||||||||||||||||||    
T  5307098 cattgaattatgtcatttttcaaattattatcagtgtc 5307061  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 18513243 - 18513306
Alignment:
Q  32 acactgacacatgtg--tacattcaattatgtcatttt-tcaaattattatcagtgtctgtgtc 92  Q
    |||||||||||| ||  |||||| |||||||||||||| ||||||||||||| |||||||||||    
T  18513243 acactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtctgtgtc 18513306  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 43188650 - 43188607
Alignment:
Q  49 cattcaattatgtcatttt-tcaaattattatcagtgtctgtgt 91  Q
    |||| |||||||||||||| ||||||||||||||||||||||||    
T  43188650 cattgaattatgtcattttctcaaattattatcagtgtctgtgt 43188607  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 25950570 - 25950607
Alignment:
Q  54 aattatgtcatttttcaaattattatcagtgtctgtgt 91  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  25950570 aattatgtcatttttcaaattattatcggtgtcggtgt 25950607  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 86
Target Start/End: Original strand, 5654610 - 5654650
Alignment:
Q  47 tacattcaattatgtcatttt-tcaaattattatcagtgtc 86  Q
    |||||| |||||||||||||| |||||||||||||||||||    
T  5654610 tacattgaattatgtcattttctcaaattattatcagtgtc 5654650  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 34547207 - 34547257
Alignment:
Q  31 gacactgacacatgtg--tacattcaattatgtcatttttcaaattattat 79  Q
    |||||| |||||||||  |||||| ||||||||||||||||||||||||||    
T  34547207 gacactcacacatgtgattacattaaattatgtcatttttcaaattattat 34547257  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 13815058 - 13815090
Alignment:
Q  47 tacattcaattatgtcatttttcaaattattat 79  Q
    |||||||||||||||||||||| ||||||||||    
T  13815058 tacattcaattatgtcattttttaaattattat 13815090  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 498416 - 498450
Alignment:
Q  47 tacattcaattatgtcatttttcaaattattatca 81  Q
    |||||| ||||||||||||||||||||||||||||    
T  498416 tacattgaattatgtcatttttcaaattattatca 498450  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 6824269 - 6824230
Alignment:
Q  37 gacacatgtg--tacattcaattatgtcatttttcaaatt 74  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  6824269 gacacatgtgattacattcaattatgtcatttttcaaatt 6824230  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 26870490 - 26870542
Alignment:
Q  36 tgacacatgtgtacattcaattatgtca-tttttcaaattattatcagtgtct 87  Q
    |||||||||  |||||||||||| |||| |||||||||| |||||||||||||    
T  26870490 tgacacatgattacattcaattaagtcaatttttcaaataattatcagtgtct 26870542  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 19323448 - 19323507
Alignment:
Q  30 cgacactgacacatgtg--tacattcaattatgtcatttt-tcaaattattatcagtgtc 86  Q
    ||||||| |||||||||  || |||||||||||||||||| |||||||| ||||||||||    
T  19323448 cgacacttacacatgtgattaaattcaattatgtcattttctcaaattactatcagtgtc 19323507  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 86
Target Start/End: Original strand, 32166202 - 32166242
Alignment:
Q  47 tacattcaattatgtcatttt-tcaaattattatcagtgtc 86  Q
    ||||||||||||||||||||| ||||||||||| |||||||    
T  32166202 tacattcaattatgtcattttctcaaattattaccagtgtc 32166242  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 35990525 - 35990584
Alignment:
Q  30 cgacactgacacatgtg--tacattcaattatgtcatttt-tcaaattattatcagtgtc 86  Q
    |||||||||||||||||  |||||||| |||| | ||||| |||||||||||||||||||    
T  35990525 cgacactgacacatgtggttacattcagttattttattttctcaaattattatcagtgtc 35990584  T

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