View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9504_low_17 (Length: 428)
Name: NF9504_low_17
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9504_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 370
Target Start/End: Original strand, 41488485 - 41488838
Alignment:
| Q |
17 |
acatttttcatttggttttttcttaacatattaaaataattaaacaaatctgtaaataggaagtttgtaagtgttcgtgtgttttgcacgacaaa-gtgt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
41488485 |
acatttttcatttggttttttcttaacatattaaaataattaaacaaatctgtaaataggaagtttgtaagtgttcgtgcgttttgcacgacaaaagtgt |
41488584 |
T |
|
| Q |
116 |
cgtgctatatagcactcctcttaataatattggctttttcnnnnnnnnnnnnnnnncttgatgttgcctagaataactattagctagaagttctatatat |
215 |
Q |
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| T |
41488585 |
cgtgctatatagcactcctcttaataatattggctttttcaaaacaaaacaaaaaacttgatgttgcctagaataactattagctagaagttctatatat |
41488684 |
T |
|
| Q |
216 |
ttatatattgatgctctatataccagttcaatcctctaaagttcttcaaagatttatttctctaaaatttatgtggcagactggcagtaattatcttaaa |
315 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
41488685 |
ttatatattgacgctctatataccagttcaatcctctaaagttcttcaaagatttatttctct-aaatttctgtggcagactggcagtaattatcttaaa |
41488783 |
T |
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| Q |
316 |
ttttgcttatttgcatgattttagtcatctagtatttcttctgtacatttcccca |
370 |
Q |
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| T |
41488784 |
ttttgcttatttgcatgattttagtcatctagtatttcttctgtacattttccca |
41488838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 41486764 - 41486827
Alignment:
| Q |
194 |
attagctagaagttctatatatttatatattgatgctctatataccagttcaatcctctaaagt |
257 |
Q |
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| T |
41486764 |
attagctggaagttttatatatttatatcttgatgctctgtgtaccagttcaatcctctaaagt |
41486827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 354
Target Start/End: Original strand, 41486848 - 41486902
Alignment:
| Q |
300 |
cagtaattatcttaaattttgcttatttgcatgattttagtcatctagtatttct |
354 |
Q |
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|||| |||||||||| |||| ||||||||||||||||||| ||| || ||||||| |
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| T |
41486848 |
cagtgattatcttaagttttccttatttgcatgattttagacatttaatatttct |
41486902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 4118384 - 4118262
Alignment:
| Q |
17 |
acatttttcatttggttttttc-ttaacatattaaaataattaaacaaatctgtaaataggaagtttgtaagtgttcgtgtgttttgcacgac-aaagtg |
114 |
Q |
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| T |
4118384 |
acatttttcatttggttttttccttaacatattaaaataattaaacaaatctgtaaataggaagtttgtaagtgttcgtgtgttttgcacgacaaaagtg |
4118285 |
T |
|
| Q |
115 |
tcgtgctatatagcactcctctt |
137 |
Q |
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|||||||||||| |||||||||| |
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| T |
4118284 |
tcgtgctatataacactcctctt |
4118262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 31713068 - 31712948
Alignment:
| Q |
17 |
acatttttcatttggttttttc-ttaacatattaaaataattaaacaaatctgtaaataggaagtttgtaagtgttcgtgtgttttgcacgac-aaagtg |
114 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||| |
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| T |
31713068 |
acatttttcatttggttttttccttaacatattaaaataattaaacaaatctgtaaataggaagtttgtaagtgttcatgtgctttgcacgacaaaagtg |
31712969 |
T |
|
| Q |
115 |
tcgtgctatatagcactcctc |
135 |
Q |
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| T |
31712968 |
tcgtgctatatagcactcctc |
31712948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 50498522 - 50498618
Alignment:
| Q |
45 |
tattaaaataattaaacaaatctgtaaataggaagtttgtaagtgttcgtgtgttttgcacgac-aaagtgtcgtgctatatagcactcctcttaat |
140 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||| |||||||| |
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| T |
50498522 |
tattaaaataattaaacaaatctgtaaataggaagtttgtaagtgttcgtgtgttttttacgacaaaaatgtcgtgctatatagcacttctcttaat |
50498618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 3326747 - 3326657
Alignment:
| Q |
39 |
ttaacatattaaaataattaaacaaatctgtaaataggaagtttgtaagtgttcgtgtgttttgcacgac-aaagtgtcgtgctatatagc |
128 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||| |
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| T |
3326747 |
ttaacatattaaaataattaaacaaatccgtaaacaggaagtttgtaagtgttcgcgtgttttggacgacaaaagtgtcttgctatatagc |
3326657 |
T |
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