View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9504_low_20 (Length: 418)
Name: NF9504_low_20
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9504_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 67 - 404
Target Start/End: Complemental strand, 41443910 - 41443572
Alignment:
| Q |
67 |
cttcatcaatattccacagctcataatatattttgttttcaagatttgaatattt-atttgttattctttctttnnnnnnntagtattttttattcttct |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41443910 |
cttcatcaatattccacagctcataatatattttgttttcaagatttgaatattttatttgttattctttctttaaaaaaatagtattttttattcttct |
41443811 |
T |
|
| Q |
166 |
tgagtttccacaactcactaaaatgtcatttgagtaaaccatgtttttaatatagttgatcggacatttattcaaaaaatatagttgatcaaacattaaa |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41443810 |
tgagtttccacaactcactaaaatgtcatttgagtaaaccatgtttttaatatagttgatcagacatttattcaaaaaatatagttgatcaaacattaaa |
41443711 |
T |
|
| Q |
266 |
tttgagtatttctcgttataaaaattcgaacattaaattgctatgatgtagtttgaaaattgatttcttgttagatcaannnnnnnnactcgttacttgt |
365 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||| |
|
|
| T |
41443710 |
tttgagtatttctcgtgataaaaattcgaacattaaattgctatgatgtagtttgaaaattgatctcttgttagatcaactttttttacttgttacttgt |
41443611 |
T |
|
| Q |
366 |
atagttaaatgttgaattataataacttagaattataat |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41443610 |
atagttaaatgttgaattataataacttagaattgtaat |
41443572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University