View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9504_low_22 (Length: 409)
Name: NF9504_low_22
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9504_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 145 - 352
Target Start/End: Original strand, 25412392 - 25412594
Alignment:
| Q |
145 |
actctaactttcatgtcgattttatcatattataataggtggaaaatatacaattatcctaaattttatgactcgattatcttgaattattgcaggtgga |
244 |
Q |
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| T |
25412392 |
actctaacttttatgtcgattttatcatataataataggtggaaaatatacaattatcctaaattttatgactcgat-atcttgaattattgcaggtgga |
25412490 |
T |
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| Q |
245 |
tttgcatgtaaattaaataaacccaattgggccttgggatcatattagaccaattcatgatcgaa-tttgtacccgcatgcataaccatggacgaaactt |
343 |
Q |
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| T |
25412491 |
tttgcatgtaaat-----atacccaattgggccttgggatcatattagaccaattcatgatcgaagtttgtaccagcatgcataaccatggacgaaactt |
25412585 |
T |
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| Q |
344 |
ttttaccag |
352 |
Q |
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||||||||| |
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| T |
25412586 |
ttttaccag |
25412594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 25412308 - 25412426
Alignment:
| Q |
18 |
tatattgggtgtaagatcttgtatttacgtttcgtattttatgatttctagttaaaatggatttacgtttcgtatcttatgatgactctaacttttatgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25412308 |
tatattgggtgtaagatcttgtatttacgtttcgtattttatgatttctagttaaaatggatttacgtttcgtatcttatgatgactctaacttttatgt |
25412407 |
T |
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| Q |
118 |
cgattttatcatataataa |
136 |
Q |
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||||||||||||||||||| |
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| T |
25412408 |
cgattttatcatataataa |
25412426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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