View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9504_low_27 (Length: 401)

Name: NF9504_low_27
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9504_low_27
NF9504_low_27
[»] chr8 (19 HSPs)
chr8 (10-194)||(3413222-3413406)
chr8 (242-385)||(3413017-3413160)
chr8 (246-323)||(39453203-39453280)
chr8 (242-322)||(35067264-35067344)
chr8 (256-325)||(41639682-41639751)
chr8 (246-318)||(45405639-45405711)
chr8 (242-325)||(67045-67128)
chr8 (246-321)||(6440189-6440264)
chr8 (247-321)||(5574364-5574438)
chr8 (242-319)||(42786548-42786625)
chr8 (242-316)||(25830139-25830213)
chr8 (242-316)||(33539509-33539583)
chr8 (245-316)||(43715981-43716052)
chr8 (242-324)||(3270766-3270848)
chr8 (242-316)||(12656026-12656100)
chr8 (287-319)||(42619883-42619915)
chr8 (246-313)||(33100367-33100434)
chr8 (287-324)||(13971053-13971090)
chr8 (287-323)||(6972291-6972327)
[»] chr2 (21 HSPs)
chr2 (242-323)||(21738504-21738585)
chr2 (256-323)||(7084601-7084668)
chr2 (246-323)||(12070955-12071032)
chr2 (256-324)||(26290736-26290804)
chr2 (246-323)||(14328489-14328566)
chr2 (242-322)||(19843588-19843668)
chr2 (243-314)||(4657406-4657477)
chr2 (242-323)||(43658598-43658679)
chr2 (242-316)||(45420239-45420313)
chr2 (256-315)||(39309527-39309586)
chr2 (242-316)||(1040617-1040691)
chr2 (242-316)||(17999571-17999645)
chr2 (256-325)||(3771489-3771558)
chr2 (243-316)||(12784290-12784363)
chr2 (287-323)||(33616604-33616640)
chr2 (247-306)||(40357990-40358049)
chr2 (287-325)||(6336387-6336425)
chr2 (288-324)||(5361930-5361966)
chr2 (256-316)||(29449329-29449388)
chr2 (256-316)||(40700313-40700373)
chr2 (242-318)||(42532630-42532706)
[»] chr4 (16 HSPs)
chr4 (246-324)||(15522462-15522540)
chr4 (242-322)||(47015109-47015189)
chr4 (242-323)||(34757795-34757876)
chr4 (242-323)||(34759069-34759150)
chr4 (246-322)||(31468876-31468952)
chr4 (256-323)||(16019594-16019661)
chr4 (242-318)||(50980694-50980770)
chr4 (246-316)||(193640-193710)
chr4 (246-323)||(31574832-31574903)
chr4 (243-323)||(46665080-46665161)
chr4 (242-316)||(1795875-1795949)
chr4 (242-316)||(11546794-11546868)
chr4 (247-313)||(44257626-44257692)
chr4 (242-316)||(49585098-49585172)
chr4 (242-316)||(55609058-55609132)
chr4 (246-314)||(48649626-48649694)
[»] chr1 (19 HSPs)
chr1 (256-326)||(29359861-29359931)
chr1 (247-324)||(30519510-30519587)
chr1 (242-324)||(34817930-34818012)
chr1 (242-320)||(49020295-49020373)
chr1 (246-323)||(29877405-29877482)
chr1 (246-322)||(30745094-30745170)
chr1 (246-322)||(30766545-30766621)
chr1 (242-325)||(12999707-12999790)
chr1 (246-316)||(30973660-30973730)
chr1 (256-318)||(49446685-49446747)
chr1 (242-324)||(33076223-33076305)
chr1 (246-324)||(52437602-52437680)
chr1 (261-321)||(42299832-42299892)
chr1 (287-322)||(740853-740888)
chr1 (287-322)||(5771144-5771179)
chr1 (242-316)||(49931657-49931731)
chr1 (250-324)||(11947907-11947981)
chr1 (287-323)||(23665624-23665660)
chr1 (256-316)||(30536105-30536165)
[»] scaffold0662 (1 HSPs)
scaffold0662 (242-322)||(1248-1328)
[»] chr3 (24 HSPs)
chr3 (242-325)||(1436920-1437003)
chr3 (242-324)||(51698962-51699044)
chr3 (256-324)||(54099242-54099310)
chr3 (256-323)||(36755937-36756004)
chr3 (242-316)||(48944604-48944678)
chr3 (256-321)||(43720496-43720561)
chr3 (246-318)||(26452614-26452686)
chr3 (242-316)||(23868872-23868946)
chr3 (242-324)||(33796370-33796452)
chr3 (242-323)||(29781001-29781082)
chr3 (247-316)||(52100369-52100438)
chr3 (242-316)||(49761080-49761154)
chr3 (242-316)||(52485576-52485650)
chr3 (242-316)||(16479736-16479810)
chr3 (246-316)||(37894135-37894205)
chr3 (287-324)||(44813340-44813377)
chr3 (287-322)||(52714870-52714905)
chr3 (246-316)||(45186445-45186515)
chr3 (259-321)||(47742403-47742465)
chr3 (246-279)||(658736-658769)
chr3 (288-321)||(48353134-48353167)
chr3 (291-324)||(52963213-52963246)
chr3 (287-323)||(29916926-29916962)
chr3 (287-323)||(29966079-29966115)
[»] chr5 (12 HSPs)
chr5 (242-324)||(16690603-16690685)
chr5 (242-322)||(9168055-9168134)
chr5 (242-322)||(38493729-38493809)
chr5 (256-314)||(34940751-34940809)
chr5 (246-322)||(6758677-6758754)
chr5 (246-323)||(14321841-14321918)
chr5 (256-307)||(26686996-26687047)
chr5 (256-307)||(26956727-26956778)
chr5 (256-316)||(38293251-38293311)
chr5 (242-324)||(884545-884627)
chr5 (242-316)||(22098359-22098433)
chr5 (242-316)||(32639147-32639221)
[»] chr7 (13 HSPs)
chr7 (242-319)||(35822865-35822942)
chr7 (246-323)||(41430038-41430115)
chr7 (246-323)||(42584910-42584987)
chr7 (242-313)||(44496699-44496770)
chr7 (246-319)||(36352474-36352548)
chr7 (246-318)||(34507097-34507169)
chr7 (246-321)||(34108745-34108822)
chr7 (242-321)||(41589974-41590050)
chr7 (242-314)||(41590415-41590487)
chr7 (287-322)||(40854554-40854589)
chr7 (256-319)||(44651120-44651183)
chr7 (242-316)||(31398228-31398302)
chr7 (242-282)||(48145628-48145668)
[»] chr6 (7 HSPs)
chr6 (245-316)||(33651127-33651198)
chr6 (246-316)||(1376474-1376544)
chr6 (246-316)||(1384222-1384292)
chr6 (242-323)||(28630202-28630283)
chr6 (246-321)||(27612982-27613057)
chr6 (242-316)||(13423072-13423146)
chr6 (262-316)||(16337142-16337196)
[»] scaffold0053 (1 HSPs)
scaffold0053 (242-315)||(12601-12674)


Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 3413406 - 3413222
Alignment:
Q  10 atgagctgatatatttttcagacattgtagcattcacaatcaaattaaatttcagtacatggaagcaaaatgggttgttacattatgatcaagtcgaaag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3413406 atgagctgatatatttttcagacattgtagcattcacaatcaaattaaatttcagtacatggaagcaaaatgggttgttacattatgatcaagtcgaaag 3413307  T
Q  110 tgatcttctagaaaggagtgtcttaggggttgggaaagtacacatatgtaatagagaaatatatttgtgcaaccatttcctaaca 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3413306 tgatcttctagaaaggagtgtcttaggggttgggaaagtacacatatgtaatagagaaatatatttgtgcaaccatttcctaaca 3413222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 242 - 385
Target Start/End: Complemental strand, 3413160 - 3413017
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctctatgtaatactatctatta 341  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||    
T  3413160 gtgccaatacatgattttctttgtaaaaatatgactgtcaatgttgttgtcaaccaaattgatgttcaaataacattgttctatgtaatactatccatta 3413061  T
Q  342 actgtccttctgtacttgacaacaatgtcacagtaaaaacattc 385  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  3413060 actgtccttttgtacttgacaacaatgtcacagtaaaaacattc 3413017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 246 - 323
Target Start/End: Complemental strand, 39453280 - 39453203
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctct 323  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39453280 caatacataattttctttgtaaaaatatgattgtcaatgtggttgtcaatcaaattgatgttcaaataacattgctct 39453203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 242 - 322
Target Start/End: Original strand, 35067264 - 35067344
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctc 322  Q
    ||||||| ||||  ||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||    
T  35067264 gtgccaacacatacttttctttgtaaaaatatggttgtcaatgtggttgtcaaccaaattgatgttcaaataacattgctc 35067344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 256 - 325
Target Start/End: Complemental strand, 41639751 - 41639682
Alignment:
Q  256 ttttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctctat 325  Q
    ||||||||||||||||||| ||||||| || |||||||| ||||||||||||||||||||||||||||||    
T  41639751 ttttctttgtaaaaatatggttgtcaacgtggttgtcaaccaaattgatgttcaaataacattgctctat 41639682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 246 - 318
Target Start/End: Original strand, 45405639 - 45405711
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacatt 318  Q
    ||||| ||||||||||||||||||||||  ||||| |||| ||||||||||| ||||||||||||||||||||    
T  45405639 caatatatgattttctttgtaaaaatatagttgtccatgtggttgtcaatcacattgatgttcaaataacatt 45405711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 67128 - 67045
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctctat 325  Q
    |||||||||||||||||||||||||||||| || ||||| || | |||||||| |||||| |||||||||||||| | ||||||    
T  67128 gtgccaatacatgattttctttgtaaaaatgtggttgtctatttggttgtcaagcaaattaatgttcaaataacactactctat 67045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 246 - 321
Target Start/End: Original strand, 6440189 - 6440264
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgct 321  Q
    ||||||||  ||||||||||||||||||| |||||||| | |||||||| ||| ||||||||||||||||||||||    
T  6440189 caatacatacttttctttgtaaaaatatggttgtcaatttggttgtcaaccaagttgatgttcaaataacattgct 6440264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 321
Target Start/End: Original strand, 5574364 - 5574438
Alignment:
Q  247 aatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgct 321  Q
    |||||||  |||||||||||||||||||  ||||||| | |||||||| ||||||||||||||||||||||||||    
T  5574364 aatacatacttttctttgtaaaaatatgggtgtcaatatagttgtcaaccaaattgatgttcaaataacattgct 5574438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 242 - 319
Target Start/End: Complemental strand, 42786625 - 42786548
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattg 319  Q
    ||||||||||||  ||||||||||||||  |||||||||||| | |||||||| ||| ||||||||||||||||||||    
T  42786625 gtgccaatacatatttttctttgtaaaatcatgattgtcaatttggttgtcaaccaagttgatgttcaaataacattg 42786548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 25830213 - 25830139
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||||||||  |||||||||||||||| || ||||| || | ||||| || |||||||||||||||||||||    
T  25830213 gtgccaatacatacttttctttgtaaaaatgtggttgtccatttagttgttaaacaaattgatgttcaaataaca 25830139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 33539509 - 33539583
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||||||||  ||||||||| |||||| || ||||| || | |||||||| |||||||||||||||||||||    
T  33539509 gtgccaatacatacttttctttgaaaaaatgtggttgtccatttagttgtcaagcaaattgatgttcaaataaca 33539583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 316
Target Start/End: Original strand, 43715981 - 43716052
Alignment:
Q  245 ccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    |||||||||  ||||||| |||||||| || ||||| || | |||||||| |||||||||||||||||||||    
T  43715981 ccaatacatacttttcttggtaaaaatgtggttgtccatttagttgtcaagcaaattgatgttcaaataaca 43716052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 324
Target Start/End: Complemental strand, 3270848 - 3270766
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctcta 324  Q
    |||||||| |||  |||| ||| ||||| |||| |||||||| | |||||||| ||| ||||||||||||||||||| |||||    
T  3270848 gtgccaatccatacttttgtttataaaattatggttgtcaatttagttgtcaaccaagttgatgttcaaataacattactcta 3270766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 12656026 - 12656100
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    |||||||| |||  ||||||||||||||| ||| ||||| || | |||||||| ||||| |||||||||||||||    
T  12656026 gtgccaatgcatacttttctttgtaaaaacatggttgtctatttggttgtcaagcaaatagatgttcaaataaca 12656100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 319
Target Start/End: Complemental strand, 42619915 - 42619883
Alignment:
Q  287 gttgtcaatcaaattgatgttcaaataacattg 319  Q
    |||||||||||||||||||||||||||||||||    
T  42619915 gttgtcaatcaaattgatgttcaaataacattg 42619883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 313
Target Start/End: Complemental strand, 33100434 - 33100367
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaata 313  Q
    ||||||||  ||||||||||||||||| | ||||| || | |||||||| ||||| ||||||||||||    
T  33100434 caatacatacttttctttgtaaaaataaggttgtctatttggttgtcaaacaaatggatgttcaaata 33100367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 13971053 - 13971090
Alignment:
Q  287 gttgtcaatcaaattgatgttcaaataacattgctcta 324  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  13971053 gttgtcaaccaaactgatgttcaaataacattgctcta 13971090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 323
Target Start/End: Original strand, 6972291 - 6972327
Alignment:
Q  287 gttgtcaatcaaattgatgttcaaataacattgctct 323  Q
    ||||||||  |||||||||||||||||||||||||||    
T  6972291 gttgtcaactaaattgatgttcaaataacattgctct 6972327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 242 - 323
Target Start/End: Complemental strand, 21738585 - 21738504
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctct 323  Q
    ||||||| ||||  |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  21738585 gtgccaacacatatttttctttgtaaaaatatgattgtcaatgtcgttgtcaaccaaattgatgttcaaataacattgctct 21738504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 7084668 - 7084601
Alignment:
Q  256 ttttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctct 323  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  7084668 ttttctttgtaaaaatatgattgtcaatgtggttgtcaaccaaattgatgttcaaataacattgctct 7084601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 246 - 323
Target Start/End: Original strand, 12070955 - 12071032
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctct 323  Q
    ||||||||||||||||||||||||| ||| ||||| |||| ||||||||||| |||||||||||||||||||||||||    
T  12070955 caatacatgattttctttgtaaaaagatggttgtccatgtggttgtcaatcacattgatgttcaaataacattgctct 12071032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 26290804 - 26290736
Alignment:
Q  256 ttttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctcta 324  Q
    |||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||    
T  26290804 ttttctttgtaaaaatatgattgtcaatgtagttatcaaccaaattgatgttcaaataacattgctcta 26290736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 246 - 323
Target Start/End: Original strand, 14328489 - 14328566
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctct 323  Q
    ||||||||||||||||| |||||||||| |||||| |||| ||||||||||| | |||||||||||||||| ||||||    
T  14328489 caatacatgattttcttagtaaaaatataattgtccatgtggttgtcaatcacaatgatgttcaaataacactgctct 14328566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 242 - 322
Target Start/End: Original strand, 19843588 - 19843668
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctc 322  Q
    ||||||| ||||  |||||||||||||||||| ||||||||| |  ||||||| |||||||||||||||||||||||||||    
T  19843588 gtgccaacacatacttttctttgtaaaaatataattgtcaatatgattgtcaaccaaattgatgttcaaataacattgctc 19843668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 4657406 - 4657477
Alignment:
Q  243 tgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataa 314  Q
    ||||||||||  ||||||||||||||||| |||||||| || | |||||||| |||||||||||||||||||    
T  4657406 tgccaatacacaattttctttgtaaaaatgtgattgtccatttggttgtcaagcaaattgatgttcaaataa 4657477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 242 - 323
Target Start/End: Complemental strand, 43658679 - 43658598
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctct 323  Q
    |||| |||||||  ||||||||||||||| ||  |||||||| | |||||||| |||||| |||||||||||||||||||||    
T  43658679 gtgctaatacatacttttctttgtaaaaaaatagttgtcaatatggttgtcaaccaaattaatgttcaaataacattgctct 43658598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 45420239 - 45420313
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||||||||  |||||||||||||||| || ||||| || | ||||||||  ||||||||||||||||||||    
T  45420239 gtgccaatacatatttttctttgtaaaaatgtggttgtctatttagttgtcaaataaattgatgttcaaataaca 45420313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 315
Target Start/End: Original strand, 39309527 - 39309586
Alignment:
Q  256 ttttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataac 315  Q
    |||||||||||||||||||||| ||||| |  ||||||| ||||||||| ||||||||||    
T  39309527 ttttctttgtaaaaatatgattatcaatatgattgtcaaccaaattgattttcaaataac 39309586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 1040617 - 1040691
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||||||||  |||||||||||||||  |||||||| || |  ||||||| ||||| |||||||||||||||    
T  1040617 gtgccaatacatacttttctttgtaaaaacgtgattgtctatttgattgtcaagcaaatagatgttcaaataaca 1040691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 17999645 - 17999571
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||||||||  ||||||||||||||| | | ||||| || | |||||||| ||||| |||||||||||||||    
T  17999645 gtgccaatacatatttttctttgtaaaaacaaggttgtctatttagttgtcaaacaaatagatgttcaaataaca 17999571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 325
Target Start/End: Original strand, 3771489 - 3771558
Alignment:
Q  256 ttttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctctat 325  Q
    |||||||||||||||| || ||||| || | |||||||| |||||||| |||||||||||| | ||||||    
T  3771489 ttttctttgtaaaaatgtggttgtccatttagttgtcaagcaaattgacgttcaaataacactactctat 3771558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 316
Target Start/End: Complemental strand, 12784363 - 12784290
Alignment:
Q  243 tgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||| |||  ||||||||||||||| ||| ||||| || | |||||||| ||||| |||||||||||||||    
T  12784363 tgccaatgcatatttttctttgtaaaaacatggttgtctatttagttgtcaagcaaatagatgttcaaataaca 12784290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 323
Target Start/End: Original strand, 33616604 - 33616640
Alignment:
Q  287 gttgtcaatcaaattgatgttcaaataacattgctct 323  Q
    |||||||| ||||||||||||||||||||||||||||    
T  33616604 gttgtcaaccaaattgatgttcaaataacattgctct 33616640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 306
Target Start/End: Complemental strand, 40358049 - 40357990
Alignment:
Q  247 aatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgt 306  Q
    ||||||| |||||||||||||||||||||||||| || |  |||||||  ||||||||||    
T  40358049 aatacataattttctttgtaaaaatatgattgtctatttgattgtcaaataaattgatgt 40357990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 325
Target Start/End: Original strand, 6336387 - 6336425
Alignment:
Q  287 gttgtcaatcaaattgatgttcaaataacattgctctat 325  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  6336387 gttgtcaaccaaattgatgttcaaataatattgctctat 6336425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 5361930 - 5361966
Alignment:
Q  288 ttgtcaatcaaattgatgttcaaataacattgctcta 324  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  5361930 ttgtcaaccaaattgatgttcgaataacattgctcta 5361966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 29449329 - 29449388
Alignment:
Q  256 ttttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||||||||||| ||| ||||| || | |||||||| ||||| |||||||||||||||    
T  29449329 ttttctttgtaaaaacatg-ttgtctatttggttgtcaagcaaatagatgttcaaataaca 29449388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 40700313 - 40700373
Alignment:
Q  256 ttttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    |||| ||| |||||| ||||||||| || | |||||||| ||||| |||||||||||||||    
T  40700313 ttttttttataaaaacatgattgtctatttggttgtcaagcaaatagatgttcaaataaca 40700373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 318
Target Start/End: Complemental strand, 42532706 - 42532630
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacatt 318  Q
    ||||||||||||  |||||||| |||||| ||  | ||| || | |||||||| ||||| |||||||||||||||||    
T  42532706 gtgccaatacatatttttctttataaaaacatagtagtctatttggttgtcaagcaaatagatgttcaaataacatt 42532630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 246 - 324
Target Start/End: Original strand, 15522462 - 15522540
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctcta 324  Q
    ||||||||||||||||||||||||| ||| ||||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  15522462 caatacatgattttctttgtaaaaagatggttgtccatgtggttgtcaatcacattgatgttcaaataacattgctcta 15522540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 242 - 322
Target Start/End: Original strand, 47015109 - 47015189
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctc 322  Q
    ||||||||| ||  |||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||    
T  47015109 gtgccaatagatacttttctttgtaaaaatatgattgtcaatgtggttgtcaaccaaactgatgttcaaataacattgctc 47015189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 242 - 323
Target Start/End: Complemental strand, 34757876 - 34757795
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctct 323  Q
    ||||||| ||||| |||||||||||||||||||||||||| |||  ||||||||||||||||| || |||||||||||||||    
T  34757876 gtgccaacacatgtttttctttgtaaaaatatgattgtcagtgtgattgtcaatcaaattgatatttaaataacattgctct 34757795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 242 - 323
Target Start/End: Complemental strand, 34759150 - 34759069
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctct 323  Q
    ||||||| ||||| |||||||||||||||||||||||||| |||  ||||||||||||||||| || |||||||||||||||    
T  34759150 gtgccaacacatgtttttctttgtaaaaatatgattgtcagtgtgattgtcaatcaaattgatatttaaataacattgctct 34759069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 246 - 322
Target Start/End: Complemental strand, 31468952 - 31468876
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctc 322  Q
    ||||||||||||||||||||||||| ||||||||| || | ||||||||||| |||||| |||||||||||||||||    
T  31468952 caatacatgattttctttgtaaaaagatgattgtctatatggttgtcaatcacattgatattcaaataacattgctc 31468876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 256 - 323
Target Start/End: Original strand, 16019594 - 16019661
Alignment:
Q  256 ttttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctct 323  Q
    |||||||| |||||||||| |||||||| |  ||||||||||||||||||||||||||||||||||||    
T  16019594 ttttctttataaaaatatggttgtcaatatgcttgtcaatcaaattgatgttcaaataacattgctct 16019661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 50980694 - 50980770
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacatt 318  Q
    ||||||||||||  |||||||||||||||| |||||||| || | |||||| | |||||||||||| ||||||||||    
T  50980694 gtgccaatacatacttttctttgtaaaaatgtgattgtccatttagttgtccagcaaattgatgtttaaataacatt 50980770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 316
Target Start/End: Original strand, 193640 - 193710
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||||  ||||||||||||||| ||||||||| || | |||||||| ||||| |||||||||||||||    
T  193640 caatacatatttttctttgtaaaaacatgattgtctatttggttgtcaagcaaatagatgttcaaataaca 193710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 323
Target Start/End: Complemental strand, 31574903 - 31574832
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctct 323  Q
    ||||||||||||||||||||||||| ||| ||||| |||| ||||||||||      |||||||||||||||||||||    
T  31574903 caatacatgattttctttgtaaaaagatggttgtccatgtggttgtcaatc------atgttcaaataacattgctct 31574832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 323
Target Start/End: Complemental strand, 46665161 - 46665080
Alignment:
Q  243 tgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgtt-caaataacattgctct 323  Q
    |||||||||||  ||||||||||||| ||||| |||||||| | |||||||||||| ||||||||  |||||||||| ||||    
T  46665161 tgccaatacatacttttctttgtaaatatatggttgtcaatttggttgtcaatcaagttgatgttataaataacatttctct 46665080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 1795949 - 1795875
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||||||||  ||||||| |||||||| || ||||| || | ||||| || |||||||||||||||||||||    
T  1795949 gtgccaatacatacttttcttggtaaaaatgtggttgtccatttagttgttaagcaaattgatgttcaaataaca 1795875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 11546868 - 11546794
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    |||||||||||| ||||| ||||||||||| || ||||| || |  |||||||  ||||||||||||||||||||    
T  11546868 gtgccaatacataattttttttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaaataaca 11546794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 313
Target Start/End: Complemental strand, 44257692 - 44257626
Alignment:
Q  247 aatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaata 313  Q
    |||||||  |||||||| ||||||| |||||||| || | |||||||| ||||||||||||||||||    
T  44257692 aatacatacttttctttataaaaatgtgattgtccatttagttgtcaaacaaattgatgttcaaata 44257626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 49585098 - 49585172
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||||||||  ||||||| |||||||| || ||||| || | |||||||| |||||| ||||||||||||||    
T  49585098 gtgccaatacatacttttcttggtaaaaatgtggttgtccatttagttgtcaagcaaattaatgttcaaataaca 49585172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 55609132 - 55609058
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||||||||  ||||||||||||||| | | ||||| || | |||||||| ||||| |||||||||||||||    
T  55609132 gtgccaatacatatttttctttgtaaaaacaaggttgtctatttggttgtcaagcaaatagatgttcaaataaca 55609058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 314
Target Start/End: Original strand, 48649626 - 48649694
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataa 314  Q
    ||||||||  |||||||||| ||||| || ||||| || | |||||||| |||||||||||||||||||    
T  48649626 caatacatacttttctttgttaaaatgtggttgtctatttagttgtcaaacaaattgatgttcaaataa 48649694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 256 - 326
Target Start/End: Original strand, 29359861 - 29359931
Alignment:
Q  256 ttttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctctatg 326  Q
    |||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29359861 ttttctttataaaaatatggttgtcaatgtggttgtcaatcaaattgatgttcaaataacattgctctatg 29359931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 247 - 324
Target Start/End: Complemental strand, 30519587 - 30519510
Alignment:
Q  247 aatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctcta 324  Q
    |||||||||||||||||||||||| ||| ||||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  30519587 aatacatgattttctttgtaaaaagatggttgtccatgtggttgtcaatcacattgatgttcaaataacattgctcta 30519510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 242 - 324
Target Start/End: Complemental strand, 34818012 - 34817930
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctcta 324  Q
    ||||||| ||||  ||||||||||||||||||| |||||||| |  |||||||  ||||||||||||||||||||||||||||    
T  34818012 gtgccaacacatatttttctttgtaaaaatatggttgtcaatatgattgtcaactaaattgatgttcaaataacattgctcta 34817930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 242 - 320
Target Start/End: Complemental strand, 49020373 - 49020295
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgc 320  Q
    ||||||||| ||  ||||||||||||||||||| |||||||| | |||||||| ||||||||||||||||||| |||||    
T  49020373 gtgccaatatatatttttctttgtaaaaatatggttgtcaatttggttgtcaaccaaattgatgttcaaataaaattgc 49020295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 323
Target Start/End: Original strand, 29877405 - 29877482
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctct 323  Q
    |||||||| |||||||||||||||||||| ||||| || |  |||||||| |||||||||||||||||||||| ||||    
T  29877405 caatacataattttctttgtaaaaatatggttgtccatatgattgtcaataaaattgatgttcaaataacatttctct 29877482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 322
Target Start/End: Original strand, 30745094 - 30745170
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctc 322  Q
    |||||||| ||||||||||||| | |||| ||||| || | ||||||||||||||| ||||||||||||||||||||    
T  30745094 caatacataattttctttgtaagagtatggttgtctatatggttgtcaatcaaattaatgttcaaataacattgctc 30745170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 322
Target Start/End: Original strand, 30766545 - 30766621
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctc 322  Q
    |||||||| ||||||||||||| | |||| ||||| || | ||||||||||||||| ||||||||||||||||||||    
T  30766545 caatacataattttctttgtaagagtatggttgtctatatggttgtcaatcaaattaatgttcaaataacattgctc 30766621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 12999790 - 12999707
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctctat 325  Q
    ||||||||||||  |||||||||||||||| || ||||| || | |||||||| ||||||||||||||||||||| | ||||||    
T  12999790 gtgccaatacatatttttctttgtaaaaatgtggttgtccatttagttgtcaagcaaattgatgttcaaataacactactctat 12999707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 316
Target Start/End: Original strand, 30973660 - 30973730
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||||  |||||||||||||||| |||||||| || | |||||||| |||||||||||||||||||||    
T  30973660 caatacatacttttctttgtaaaaatgtgattgtccatttagttgtcaagcaaattgatgttcaaataaca 30973730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 318
Target Start/End: Complemental strand, 49446747 - 49446685
Alignment:
Q  256 ttttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacatt 318  Q
    |||||||||||||||| |||||||| || | |||||||| |||||||||||||||||||||||    
T  49446747 ttttctttgtaaaaatgtgattgtccatttagttgtcaagcaaattgatgttcaaataacatt 49446685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 324
Target Start/End: Original strand, 33076223 - 33076305
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctcta 324  Q
    |||||||||||| ||||||||||||||| | || ||||| || |  || |||| ||||||||||||||||||||| |||||||    
T  33076223 gtgccaatacataattttctttgtaaaattgtggttgtccatttaattatcaagcaaattgatgttcaaataacactgctcta 33076305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 324
Target Start/End: Original strand, 52437602 - 52437680
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctcta 324  Q
    |||||||| ||||| |||||||||| ||| ||||| ||||  |||||||||| |||||| || ||||||||||||||||    
T  52437602 caatacataattttatttgtaaaaagatggttgtccatgtgattgtcaatcacattgatatttaaataacattgctcta 52437680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 261 - 321
Target Start/End: Original strand, 42299832 - 42299892
Alignment:
Q  261 tttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgct 321  Q
    ||||||| || ||||||||| |||| ||| ||||||| |||||||||||||||||||||||    
T  42299832 tttgtaagaaaatgattgtctatgtagttatcaatcacattgatgttcaaataacattgct 42299892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 322
Target Start/End: Complemental strand, 740888 - 740853
Alignment:
Q  287 gttgtcaatcaaattgatgttcaaataacattgctc 322  Q
    ||||||||||||||||||||||||||||||||||||    
T  740888 gttgtcaatcaaattgatgttcaaataacattgctc 740853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 322
Target Start/End: Complemental strand, 5771179 - 5771144
Alignment:
Q  287 gttgtcaatcaaattgatgttcaaataacattgctc 322  Q
    ||||||||||||||||||||||||||||||||||||    
T  5771179 gttgtcaatcaaattgatgttcaaataacattgctc 5771144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 49931657 - 49931731
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||||||||  ||||||||| |||||| || ||||| || | ||| |||| |||||||||||||||||||||    
T  49931657 gtgccaatacatacttttctttggaaaaatgtggttgtccatttagttatcaagcaaattgatgttcaaataaca 49931731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 11947907 - 11947981
Alignment:
Q  250 acatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctcta 324  Q
    ||||| |||| |||||||||||||| ||||| || | |||||||  ||||| |||||||| |||||||| |||||    
T  11947907 acatgcttttatttgtaaaaatatggttgtctatttagttgtcacacaaatagatgttcatataacattactcta 11947981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 323
Target Start/End: Complemental strand, 23665660 - 23665624
Alignment:
Q  287 gttgtcaatcaaattgatgttcaaataacattgctct 323  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  23665660 gttgtcaaccaaattgatattcaaataacattgctct 23665624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 30536105 - 30536165
Alignment:
Q  256 ttttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    |||||||||||||||| || |||||  | | ||||| || |||||||||||||||||||||    
T  30536105 ttttctttgtaaaaatgtggttgtccgtttagttgttaagcaaattgatgttcaaataaca 30536165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 242 - 322
Target Start/End: Original strand, 1248 - 1328
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctc 322  Q
    ||||||||| ||  |||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||    
T  1248 gtgccaatagatacttttctttgtaaaaatatgattgtcaatgtggttgtcaaccaaactgatgttcaaataacattgctc 1328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 242 - 325
Target Start/End: Original strand, 1436920 - 1437003
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctctat 325  Q
    ||||||| ||||  ||||||||||||||||||| |||||||||| ||||| || ||||||||||||||||||||||||||||||    
T  1436920 gtgccaacacatacttttctttgtaaaaatatggttgtcaatgtggttgtaaaccaaattgatgttcaaataacattgctctat 1437003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 242 - 324
Target Start/End: Original strand, 51698962 - 51699044
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctcta 324  Q
    ||||||| ||||  |||||||||||| |||||| |||||||||| |||||||| |||||||||||||||||||||||||||||    
T  51698962 gtgccaacacatacttttctttgtaagaatatggttgtcaatgtggttgtcaaccaaattgatgttcaaataacattgctcta 51699044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 54099310 - 54099242
Alignment:
Q  256 ttttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctcta 324  Q
    ||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||| |||||    
T  54099310 ttttctttgtaaaaatatgattgtcaatgtaattgtcaaccaaattgatgttcaaataacattactcta 54099242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 36756004 - 36755937
Alignment:
Q  256 ttttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctct 323  Q
    ||||||||||||||||||| ||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  36756004 ttttctttgtaaaaatatggttgtcaatgtgattgtcaatcaaattgatattcaaataacattgctct 36755937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 48944678 - 48944604
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||||||||  ||||||||||||||||||||||||  || | |||||||| |||||||||||||||||||||    
T  48944678 gtgccaatacatatttttctttgtaaaaatatgattgttcatttagttgtcaagcaaattgatgttcaaataaca 48944604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 256 - 321
Target Start/End: Original strand, 43720496 - 43720561
Alignment:
Q  256 ttttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgct 321  Q
    |||||||| ||||||||||||||||||||| |||||||| |||||| ||||||||| |||||||||    
T  43720496 ttttctttataaaaatatgattgtcaatgtggttgtcaaccaaattaatgttcaaagaacattgct 43720561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 26452686 - 26452614
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacatt 318  Q
    ||||||||||||||||||||||||| ||||||||| || |  |||||||||| |||||| |||||||||||||    
T  26452686 caatacatgattttctttgtaaaaagatgattgtccatataattgtcaatcacattgatattcaaataacatt 26452614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 23868946 - 23868872
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||||||||  ||||| ||||||||||||||||||| || | |||||||| ||||| |||||||||||||||    
T  23868946 gtgccaatacatttttttccttgtaaaaatatgattgtctatttggttgtcaagcaaatagatgttcaaataaca 23868872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 324
Target Start/End: Original strand, 33796370 - 33796452
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctcta 324  Q
    ||||||| ||||  |||||||| |||||||||| ||||||||||  ||||||| ||||||||| ||||||||||||| |||||    
T  33796370 gtgccaacacatacttttctttataaaaatatggttgtcaatgtgattgtcaaccaaattgattttcaaataacattactcta 33796452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 242 - 323
Target Start/End: Original strand, 29781001 - 29781082
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctct 323  Q
    |||||||||||   |||||||| |||||||||||||||| || |  ||||||||||||||||||| ||||||||||| ||||    
T  29781001 gtgccaatacaaacttttctttataaaaatatgattgtccatatgattgtcaatcaaattgatgtccaaataacattactct 29781082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 52100369 - 52100438
Alignment:
Q  247 aatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    |||||||  ||||||||||||||||||||||||| || |  ||||||| |||||||||||||||||||||    
T  52100369 aatacatatttttctttgtaaaaatatgattgtccatttaattgtcaagcaaattgatgttcaaataaca 52100438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 49761154 - 49761080
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||||||||  |||||||||||||||| || ||||| || | |||||||| |||||||||||| ||||||||    
T  49761154 gtgccaatacatatttttctttgtaaaaatgtggttgtccatttagttgtcaagcaaattgatgttgaaataaca 49761080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 52485576 - 52485650
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||||||||  ||||||||||||||||||| ||||| ||   |||||||| ||||| |||||||||||||||    
T  52485576 gtgccaatacatacttttctttgtaaaaatatggttgtccattaggttgtcaaacaaatagatgttcaaataaca 52485650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 16479736 - 16479810
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||||||||  ||||||||||||||| | | ||||| || | |||||||| ||||| |||||||||||||||    
T  16479736 gtgccaatacatatttttctttgtaaaaacaaggttgtctatttggttgtcaagcaaatagatgttcaaataaca 16479810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 316
Target Start/End: Complemental strand, 37894205 - 37894135
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||||  ||||||| |||||||| || ||||| || | |||||||| |||||||||||||||||||||    
T  37894205 caatacatacttttcttggtaaaaatgtggttgtccatttagttgtcaagcaaattgatgttcaaataaca 37894135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 44813377 - 44813340
Alignment:
Q  287 gttgtcaatcaaattgatgttcaaataacattgctcta 324  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  44813377 gttgtcaatcacattgatgttcaaataacattgctcta 44813340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 322
Target Start/End: Original strand, 52714870 - 52714905
Alignment:
Q  287 gttgtcaatcaaattgatgttcaaataacattgctc 322  Q
    |||||||| |||||||||||||||||||||||||||    
T  52714870 gttgtcaaccaaattgatgttcaaataacattgctc 52714905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 316
Target Start/End: Complemental strand, 45186515 - 45186445
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||||  ||||| |||||||| |||| ||||| || | |||||||| ||||||||||||| |||||||    
T  45186515 caatacatacttttcgttgtaaaagtatggttgtccatttggttgtcaaacaaattgatgttcgaataaca 45186445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 47742403 - 47742465
Alignment:
Q  259 tctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgct 321  Q
    |||| ||||||||||  |||| ||||| |||||||| ||||||| |||||||||||| |||||    
T  47742403 tcttcgtaaaaatatagttgttaatgtggttgtcaaccaaattgctgttcaaataacgttgct 47742465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 279
Target Start/End: Complemental strand, 658769 - 658736
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgt 279  Q
    |||||||| |||||||||||||||||||||||||    
T  658769 caatacataattttctttgtaaaaatatgattgt 658736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 48353134 - 48353167
Alignment:
Q  288 ttgtcaatcaaattgatgttcaaataacattgct 321  Q
    ||||||| ||||||||||||||||||||||||||    
T  48353134 ttgtcaaccaaattgatgttcaaataacattgct 48353167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 52963246 - 52963213
Alignment:
Q  291 tcaatcaaattgatgttcaaataacattgctcta 324  Q
    ||||| ||||||||||||||||||||||||||||    
T  52963246 tcaattaaattgatgttcaaataacattgctcta 52963213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 323
Target Start/End: Complemental strand, 29916962 - 29916926
Alignment:
Q  287 gttgtcaatcaaattgatgttcaaataacattgctct 323  Q
    |||||||| |||||||||||||||||||| |||||||    
T  29916962 gttgtcaaccaaattgatgttcaaataacgttgctct 29916926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 323
Target Start/End: Complemental strand, 29966115 - 29966079
Alignment:
Q  287 gttgtcaatcaaattgatgttcaaataacattgctct 323  Q
    |||||||| |||||||||||||||||||| |||||||    
T  29966115 gttgtcaaccaaattgatgttcaaataacgttgctct 29966079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 242 - 324
Target Start/End: Original strand, 16690603 - 16690685
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctcta 324  Q
    ||||||| ||||  ||||||||||||||||||| |||||||||| |||||||| ||||||||| |||||||||||||||||||    
T  16690603 gtgccaacacatacttttctttgtaaaaatatggttgtcaatgtggttgtcaaccaaattgatattcaaataacattgctcta 16690685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 242 - 322
Target Start/End: Complemental strand, 9168134 - 9168055
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctc 322  Q
    ||||||| ||||  |||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||    
T  9168134 gtgccaacacatacttttctttgtaaaa-tatgattgtcaatatggttgtcaaccaaattgatgttcaaataacattgctc 9168055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 242 - 322
Target Start/End: Original strand, 38493729 - 38493809
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctc 322  Q
    ||||||| ||||  |||||||||| ||||||||  ||||||||| |||||||| |||||||||||||||||||||||||||    
T  38493729 gtgccaacacatacttttctttgttaaaatatgggtgtcaatgtggttgtcaaccaaattgatgttcaaataacattgctc 38493809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 314
Target Start/End: Original strand, 34940751 - 34940809
Alignment:
Q  256 ttttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataa 314  Q
    |||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  34940751 ttttctttataaaaatatgattgtcaatgtggttgtcaaccaaattgatgttcaaataa 34940809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 322
Target Start/End: Complemental strand, 6758754 - 6758677
Alignment:
Q  246 caatacatgattttctttgtaaaaata-tgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctc 322  Q
    ||||||||||||||||||| ||||| | || ||||| |||| ||||||||||| ||||||||||||||||||||||||    
T  6758754 caatacatgattttctttgaaaaaaaaatggttgtccatgtggttgtcaatcatattgatgttcaaataacattgctc 6758677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 323
Target Start/End: Complemental strand, 14321918 - 14321841
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctct 323  Q
    |||||||| ||||||||||||||| |||| ||||| || | ||||||||| |||||||||||||||||| ||||||||    
T  14321918 caatacataattttctttgtaaaagtatggttgtccatatggttgtcaattaaattgatgttcaaataaaattgctct 14321841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 307
Target Start/End: Original strand, 26686996 - 26687047
Alignment:
Q  256 ttttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgtt 307  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||| |||||    
T  26686996 ttttctttgtaaaaatatggttgtcaatgtagttgtcaatcaaattaatgtt 26687047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 307
Target Start/End: Original strand, 26956727 - 26956778
Alignment:
Q  256 ttttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgtt 307  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||| |||||    
T  26956727 ttttctttgtaaaaatatggttgtcaatgtagttgtcaatcaaattaatgtt 26956778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 256 - 316
Target Start/End: Complemental strand, 38293311 - 38293251
Alignment:
Q  256 ttttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||||||||||| ||||||||| || | |||||||| ||||| |||||||||||||||    
T  38293311 ttttctttgtaaaaacatgattgtctatttggttgtcaagcaaatagatgttcaaataaca 38293251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 324
Target Start/End: Original strand, 884545 - 884627
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctcta 324  Q
    ||||||| ||||  ||||| ||||||||||||| |||| ||| |  |||||||  ||||||||||||||||||||||| ||||    
T  884545 gtgccaacacatacttttcattgtaaaaatatggttgttaatatgattgtcaactaaattgatgttcaaataacattgttcta 884627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 22098359 - 22098433
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||||||||  |||||||||||||||| || ||||| || |  || |||| |||||||||||||||||||||    
T  22098359 gtgccaatacatacttttctttgtaaaaatgtggttgtccatttaattatcaagcaaattgatgttcaaataaca 22098433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 32639147 - 32639221
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    |||| |||||||  ||||||||||||||||| ||||||| || |  ||||||  ||||| |||||||||||||||    
T  32639147 gtgctaatacatacttttctttgtaaaaataagattgtctatttgattgtcatgcaaatagatgttcaaataaca 32639221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 242 - 319
Target Start/End: Complemental strand, 35822942 - 35822865
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattg 319  Q
    ||||||||||||  ||||||||||||||||||| ||||||| || |||||||| ||||||||||||||||||||||||    
T  35822942 gtgccaatacatatttttctttgtaaaaatatggttgtcaacgtggttgtcaaccaaattgatgttcaaataacattg 35822865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 246 - 323
Target Start/End: Complemental strand, 41430115 - 41430038
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctct 323  Q
    ||||| ||||||||||||||||||| ||| ||||| |||| ||||||||||| |||||||||||||||||||||||||    
T  41430115 caatatatgattttctttgtaaaaagatggttgtccatgtggttgtcaatcacattgatgttcaaataacattgctct 41430038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 246 - 323
Target Start/End: Original strand, 42584910 - 42584987
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctct 323  Q
    ||||| ||||||||||||||||||| ||| ||||| |||| ||||||||||| |||||||||||||||||||||||||    
T  42584910 caatagatgattttctttgtaaaaagatggttgtccatgtggttgtcaatcacattgatgttcaaataacattgctct 42584987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 242 - 313
Target Start/End: Complemental strand, 44496770 - 44496699
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaata 313  Q
    |||||||||||| |||||||||||||||||||| ||||| || |  ||||||| ||||||||||||||||||    
T  44496770 gtgccaatacataattttctttgtaaaaatatggttgtccatttaattgtcaaacaaattgatgttcaaata 44496699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 319
Target Start/End: Complemental strand, 36352548 - 36352474
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgtcaatgttgtt-gtcaatcaaattgatgttcaaataacattg 319  Q
    ||||| ||||||||||||||||||| ||| ||||| |||| ||| |||||||| |||||||||||||||||||||    
T  36352548 caatatatgattttctttgtaaaaagatggttgtccatgtagtttgtcaatcacattgatgttcaaataacattg 36352474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 34507169 - 34507097
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacatt 318  Q
    |||||||||||||| ||| |||||| ||  ||||| |||| ||||||||||| ||||||||||||||||||||    
T  34507169 caatacatgattttttttataaaaagatagttgtccatgtggttgtcaatcacattgatgttcaaataacatt 34507097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 321
Target Start/End: Complemental strand, 34108822 - 34108745
Alignment:
Q  246 caatacatgattttctttgt-aaaaatatgatt-gtcaatgttgttgtcaatcaaattgatgttcaaataacattgct 321  Q
    |||||||||||||||||| | ||||| ||| || ||| |||| ||||||||||| |||||||||||||||||||||||    
T  34108822 caatacatgattttcttttttaaaaagatggtttgtccatgtggttgtcaatcacattgatgttcaaataacattgct 34108745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 321
Target Start/End: Complemental strand, 41590050 - 41589974
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgct 321  Q
    ||||||||||||  ||||| || |||||||||||||||| || |||||||||| |||||  |||||||||||||| ||||    
T  41590050 gtgccaatacatatttttccttataaaaatatgattgtctat-ttgttgtcaaacaaat--atgttcaaataacactgct 41589974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 314
Target Start/End: Complemental strand, 41590487 - 41590415
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataa 314  Q
    ||||||||||||  ||||| ||||||||| ||| ||||| || | |||||||| ||||| |||||||||||||    
T  41590487 gtgccaatacatatttttccttgtaaaaacatggttgtctatttggttgtcaagcaaatagatgttcaaataa 41590415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 322
Target Start/End: Complemental strand, 40854589 - 40854554
Alignment:
Q  287 gttgtcaatcaaattgatgttcaaataacattgctc 322  Q
    |||||||| |||||||||||||||||||||||||||    
T  40854589 gttgtcaaccaaattgatgttcaaataacattgctc 40854554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 319
Target Start/End: Complemental strand, 44651183 - 44651120
Alignment:
Q  256 ttttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattg 319  Q
    |||| |||||||||||||  || ||||| | ||||||||| ||||||||||||||||| |||||    
T  44651183 ttttttttgtaaaaatatagttatcaatatagttgtcaatgaaattgatgttcaaatatcattg 44651120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 31398228 - 31398302
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||||||||  ||||||||||||||| | | ||||| || | |||||||| |||||  ||||||||||||||    
T  31398228 gtgccaatacatatttttctttgtaaaaacaaggttgtctatttggttgtcaaacaaataaatgttcaaataaca 31398302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 48145628 - 48145668
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaa 282  Q
    ||||||||||||  ||||||||||||||||||| |||||||    
T  48145628 gtgccaatacatacttttctttgtaaaaatatggttgtcaa 48145668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 316
Target Start/End: Original strand, 33651127 - 33651198
Alignment:
Q  245 ccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||||| |||||||||||||||||||| ||||| || |  ||||||| ||||| |||||||||||||||    
T  33651127 ccaatacataattttctttgtaaaaatatggttgtctatttgattgtcaaacaaatggatgttcaaataaca 33651198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 316
Target Start/End: Original strand, 1376474 - 1376544
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||||  |||||||||||||||| || ||||| || | |||||||| |||||||||||||||||||||    
T  1376474 caatacatatttttctttgtaaaaatgtggttgtccatttagttgtcaagcaaattgatgttcaaataaca 1376544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 316
Target Start/End: Original strand, 1384222 - 1384292
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||||  |||||||||||||||| || ||||| || | |||||||| |||||||||||||||||||||    
T  1384222 caatacatatttttctttgtaaaaatgtggttgtccatttagttgtcaagcaaattgatgttcaaataaca 1384292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 242 - 323
Target Start/End: Original strand, 28630202 - 28630283
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgctct 323  Q
    ||||||| ||||| |||| |||||||||||||| ||||| || | |||||||  ||||| |||||||| |||||||| ||||    
T  28630202 gtgccaacacatgcttttatttgtaaaaatatggttgtctatttagttgtcacacaaatagatgttcatataacattactct 28630283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 321
Target Start/End: Original strand, 27612982 - 27613057
Alignment:
Q  246 caatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataacattgct 321  Q
    ||||||||  ||||||||||||| ||||| ||||| || |  ||||||| ||||| ||||||||||||||| ||||    
T  27612982 caatacatatttttctttgtaaacatatggttgtccatttgattgtcaaacaaatagatgttcaaataacactgct 27613057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 13423072 - 13423146
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||||||||  ||||||||||||||||||  ||||| |  | ||||||||  |||| |||||||||||||||    
T  13423072 gtgccaatacatatttttctttgtaaaaatatagttgtccacttggttgtcaaataaatggatgttcaaataaca 13423146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 316
Target Start/End: Original strand, 16337142 - 16337196
Alignment:
Q  262 ttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataaca 316  Q
    ||||||||||||| ||||| || | ||||||||| |||| |||||||||||||||    
T  16337142 ttgtaaaaatatggttgtctatttggttgtcaattaaatggatgttcaaataaca 16337196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 315
Target Start/End: Original strand, 12601 - 12674
Alignment:
Q  242 gtgccaatacatgattttctttgtaaaaatatgattgtcaatgttgttgtcaatcaaattgatgttcaaataac 315  Q
    ||||||||||||  ||||||| |||||||| || ||||| || | |||||||| ||||||||||||||||||||    
T  12601 gtgccaatacatacttttcttggtaaaaatgtggttgtccatttagttgtcaagcaaattgatgttcaaataac 12674  T

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