View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9504_low_29 (Length: 394)
Name: NF9504_low_29
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9504_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 106 - 376
Target Start/End: Original strand, 39712589 - 39712859
Alignment:
| Q |
106 |
cagtcctacaagccagcagttgctccggttgcggcggcctcgccggaatattcaagtcagcttgtggcaactttggaatcaggggtgagtcttggctctg |
205 |
Q |
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| T |
39712589 |
cagtcctacaagccagcagtttctccggttgcggcggcctcgccggaatattcaagtcagcttgtggcaactttggaatcaggggtgagtcttggctctg |
39712688 |
T |
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| Q |
206 |
gtgagtatttcatggatgtgtttataggtacaccacctaagcattattctttgatacttgatactggtagtgatcttaattggattcaatgtgttccttg |
305 |
Q |
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| T |
39712689 |
gtgagtatttcatggatgtgtttataggtacaccacctaagcattattctttgatacttgatactggtagtgatcttaattggattcaatgtgttccttg |
39712788 |
T |
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| Q |
306 |
cattgcttgttttgaacaaagtggtccatattatgatcctaaagaatctagttcttttgaaaatataacat |
376 |
Q |
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| T |
39712789 |
cattgcttgttttgaacaaagtggtccatattatgatcctaaagaatctagttcttttgaaaatataacat |
39712859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 39712484 - 39712522
Alignment:
| Q |
1 |
gatttaacaagaattcaaactcttcatacaagggtcatt |
39 |
Q |
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| T |
39712484 |
gatttaacaagaattcaaactcttcatacaagggtcatt |
39712522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 154 - 363
Target Start/End: Complemental strand, 15284491 - 15284282
Alignment:
| Q |
154 |
tattcaagtcagcttgtggcaactttggaatcaggggtgagtcttggctctggtgagtatttcatggatgtgtttataggtacaccacctaagcattatt |
253 |
Q |
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| T |
15284491 |
tattcaactcagcttatggccaccttggaatcaggagtaagttttggttccggtgagtatttcatcgatgtattcatcggtacgccaccaaaacattttt |
15284392 |
T |
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| Q |
254 |
ctttgatacttgatactggtagtgatcttaattggattcaatgtgttccttgcattgcttgttttgaacaaagtggtccatattatgatcctaaagaatc |
353 |
Q |
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|| |||||||||| || |||||||||||||| |||||||||||||||||||| |||||||||||| |||| ||| |||||||||||||||||||| || |
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| T |
15284391 |
ctctgatacttgacaccggtagtgatcttaactggattcaatgtgttccttgttatgcttgttttgatcaaaatggaccatattatgatcctaaagattc |
15284292 |
T |
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| Q |
354 |
tagttctttt |
363 |
Q |
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| T |
15284291 |
cacttctttt |
15284282 |
T |
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