View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9504_low_3 (Length: 681)

Name: NF9504_low_3
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9504_low_3
NF9504_low_3
[»] chr5 (4 HSPs)
chr5 (412-614)||(11336179-11336381)
chr5 (509-614)||(43379448-43379553)
chr5 (509-614)||(43378572-43378677)
chr5 (463-507)||(24135080-24135124)
[»] chr7 (4 HSPs)
chr7 (413-507)||(46964269-46964363)
chr7 (462-497)||(10414217-10414252)
chr7 (561-614)||(35752377-35752430)
chr7 (561-609)||(46294693-46294741)
[»] chr2 (4 HSPs)
chr2 (413-507)||(8985740-8985834)
chr2 (561-608)||(3466658-3466705)
chr2 (463-505)||(2483656-2483698)
chr2 (561-614)||(39062863-39062916)
[»] chr6 (4 HSPs)
chr6 (412-497)||(10740746-10740831)
chr6 (575-614)||(13208225-13208264)
chr6 (554-612)||(3163534-3163592)
chr6 (509-614)||(13207346-13207451)
[»] chr8 (2 HSPs)
chr8 (414-484)||(16585849-16585920)
chr8 (523-589)||(3582072-3582138)
[»] chr3 (1 HSPs)
chr3 (509-577)||(40613800-40613868)


Alignment Details
Target: chr5 (Bit Score: 143; Significance: 9e-75; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 412 - 614
Target Start/End: Original strand, 11336179 - 11336381
Alignment:
Q  412 cattcccaaaattatgggaactcaacaacggaagctacgaagaatttaagacggatcaaaccatgctcttgataccatgtaaacaacacaaatatacgag 511  Q
    ||||||||||||| ||||||| ||||| | ||||| ||||  ||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||    
T  11336179 cattcccaaaattttgggaacccaacagccgaagcgacgagtaatttaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatacacgag 11336278  T
Q  512 ttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggt 611  Q
    ||||||||||||||||| |||||||||||||||| |||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  11336279 ttcatctttcttccatttaggaagcctccattttccccggtccagcttttaggtgtgtgacatgtgacaaacataaaagcaagggttaggattaaaaggt 11336378  T
Q  612 ttg 614  Q
    |||    
T  11336379 ttg 11336381  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 509 - 614
Target Start/End: Complemental strand, 43379553 - 43379448
Alignment:
Q  509 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 608  Q
    ||||||||||||  |||||| | |||| |||||||| ||||  ||||| | |||||||| ||||||||| |||| ||||||||||||||| |||||||||    
T  43379553 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtggcaaaaataaaagcaagggttgggattaaaa 43379454  T
Q  609 ggtttg 614  Q
    ||||||    
T  43379453 ggtttg 43379448  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 614
Target Start/End: Original strand, 43378572 - 43378677
Alignment:
Q  509 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 608  Q
    ||||||||||||  |||||| | |||| ||||||||  |||  || || | |||||||| ||||| ||| |||| |||||||||||||||  ||||||||    
T  43378572 gagttcatctttgctccatttatgaaggctccatttaccccattctagctcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaa 43378671  T
Q  609 ggtttg 614  Q
    ||||||    
T  43378672 ggtttg 43378677  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 463 - 507
Target Start/End: Complemental strand, 24135124 - 24135080
Alignment:
Q  463 cggatcaaaccatgctcttgataccatgtaaacaacacaaatata 507  Q
    |||||||||||| |||||||||||||| | ||||| |||||||||    
T  24135124 cggatcaaaccacgctcttgataccatcttaacaatacaaatata 24135080  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 413 - 507
Target Start/End: Original strand, 46964269 - 46964363
Alignment:
Q  413 attcccaaaattatgggaactcaacaacggaagctacgaagaatttaagacggatcaaaccatgctcttgataccatgtaaacaacacaaatata 507  Q
    ||||||||| || ||||||||||||| ||||||| ||||  || | |||  || |||||||| |||||||||||||||| ||||| ||| |||||    
T  46964269 attcccaaacttttgggaactcaacagcggaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatata 46964363  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 462 - 497
Target Start/End: Complemental strand, 10414252 - 10414217
Alignment:
Q  462 acggatcaaaccatgctcttgataccatgtaaacaa 497  Q
    |||||||||||||||||||||||||||||| |||||    
T  10414252 acggatcaaaccatgctcttgataccatgttaacaa 10414217  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 614
Target Start/End: Original strand, 35752377 - 35752430
Alignment:
Q  561 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 614  Q
    ||||||||||||||||| |||| |||||| ||| ||||  ||||||||||||||    
T  35752377 tagatgtatgacatgtggcaaaaataaaatcaatggttgtgattaaaaggtttg 35752430  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 561 - 609
Target Start/End: Original strand, 46294693 - 46294741
Alignment:
Q  561 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaag 609  Q
    ||||||| |||||| ||||||  |||||| |||||||||||||||||||    
T  46294693 tagatgtgtgacatatgacaataataaaatcaagggttaggattaaaag 46294741  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 413 - 507
Target Start/End: Complemental strand, 8985834 - 8985740
Alignment:
Q  413 attcccaaaattatgggaactcaacaacggaagctacgaagaatttaagacggatcaaaccatgctcttgataccatgtaaacaacacaaatata 507  Q
    ||||||||| || ||||||||||||| ||||||| ||||  || | |||  || |||||||| |||||||||||||||| ||||| ||| |||||    
T  8985834 attcccaaacttttgggaactcaacagcggaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatata 8985740  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 561 - 608
Target Start/End: Original strand, 3466658 - 3466705
Alignment:
Q  561 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 608  Q
    ||||||| |||||| ||||||| |||||| ||||||||||||||||||    
T  3466658 tagatgtgtgacatatgacaaaaataaaatcaagggttaggattaaaa 3466705  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 463 - 505
Target Start/End: Complemental strand, 2483698 - 2483656
Alignment:
Q  463 cggatcaaaccatgctcttgataccatgtaaacaacacaaata 505  Q
    |||||| |||||||||||||||||||||| ||||| |||||||    
T  2483698 cggatcgaaccatgctcttgataccatgttaacaatacaaata 2483656  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 614
Target Start/End: Complemental strand, 39062916 - 39062863
Alignment:
Q  561 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 614  Q
    ||||||||||||||||| |||  |||||| ||| || |||||||||||||||||    
T  39062916 tagatgtatgacatgtggcaacaataaaatcaatggctaggattaaaaggtttg 39062863  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 412 - 497
Target Start/End: Complemental strand, 10740831 - 10740746
Alignment:
Q  412 cattcccaaaattatgggaactcaacaacggaagctacgaagaatttaagacggatcaaaccatgctcttgataccatgtaaacaa 497  Q
    |||||||||| || ||||||||||||  ||||||| ||  |  ||| |||  |||||||||||||||||||||||||||| |||||    
T  10740831 cattcccaaacttttgggaactcaactgcggaagcgacagatcattcaaggaggatcaaaccatgctcttgataccatgttaacaa 10740746  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 614
Target Start/End: Complemental strand, 13208264 - 13208225
Alignment:
Q  575 gtgacaaacataaaagcaagggttaggattaaaaggtttg 614  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  13208264 gtgacaaaaataaaagcaagggttgggattaaaaggtttg 13208225  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 554 - 612
Target Start/End: Original strand, 3163534 - 3163592
Alignment:
Q  554 cagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtt 612  Q
    |||||| |||||||  |||||||| |||| |||||| ||||||||||||| ||||||||    
T  3163534 cagtttatagatgtgcgacatgtgtcaaaaataaaaccaagggttaggatcaaaaggtt 3163592  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 614
Target Start/End: Original strand, 13207346 - 13207451
Alignment:
Q  509 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 608  Q
    ||||||||||||  |||||| | |||| || |||||  |||  ||||| | |||||||| ||||| ||| |||| |||||||||||||||  ||||||||    
T  13207346 gagttcatctttactccatttacgaaggctacatttaccccattccagctcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaa 13207445  T
Q  609 ggtttg 614  Q
    | ||||    
T  13207446 gatttg 13207451  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 414 - 484
Target Start/End: Original strand, 16585849 - 16585920
Alignment:
Q  414 ttcccaaaattat-gggaactcaacaacggaagctacgaagaatttaagacggatcaaaccatgctcttgat 484  Q
    ||||||||||| | ||||||||||||||||||||||| || |||| ||| | |||||||| | |||||||||    
T  16585849 ttcccaaaatttttgggaactcaacaacggaagctacaaataattcaaggcagatcaaacaaagctcttgat 16585920  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 523 - 589
Target Start/End: Complemental strand, 3582138 - 3582072
Alignment:
Q  523 tccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaa 589  Q
    |||||| |||||||||| |||| |||  ||| | |||||||||||||||||||||| ||| ||||||    
T  3582138 tccatttaggaagcctctatttatccatgtctattttttagatgtatgacatgtgagaaaaataaaa 3582072  T

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Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 509 - 577
Target Start/End: Complemental strand, 40613868 - 40613800
Alignment:
Q  509 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtg 577  Q
    ||||||||||||  |||||| || |||||||||||| |||| || || ||| ||||||| |||||||||    
T  40613868 gagttcatctttgctccatttagcaagcctccatttatccctgttcattttgtagatgtctgacatgtg 40613800  T

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