View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9504_low_34 (Length: 367)
Name: NF9504_low_34
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9504_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 29116339 - 29116689
Alignment:
| Q |
1 |
attctatatctttatgtaaatgattttcttatcacatgtagcaatggatcttacataaacgactttaagaatgatttgatgaaggaatttgagatggttg |
100 |
Q |
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| T |
29116339 |
attctatatctttatgtaaatgattttcttatcacatgtagcaatggatcttacataaacgaatttaagaatgatttgatgaaggaatttgagatggttg |
29116438 |
T |
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| Q |
101 |
atctacttcacatctcatatttccttgccatggagtttcaaagaacaagtagggcttctaattcatcaaaagag--atatgctagtgaaattcttaaaag |
198 |
Q |
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| T |
29116439 |
atctaggtcacatttcatatttccttcgcatggagtttcaaagaacaagtagggcttctaattcatcaaaagagatatatgctagtgaaattcttaaaag |
29116538 |
T |
|
| Q |
199 |
gttttagatggagtattgaaatcttgatgtaacccccattgaaccaagaccaaaactatgaaatgaaataaaagagagagaagtggatccaactcaatac |
298 |
Q |
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| T |
29116539 |
gttttagatggaatattgcaatcttgatgtaacccctattgaaccaagaccaaaactatcaaaagaaataaaagagaaagaagtggatccaactcaatac |
29116638 |
T |
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| Q |
299 |
aaaagacttattggatcatcgaagatacctttgcaacacaaagccatattt |
349 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29116639 |
aaaagactcattggatcatcgaagatacctttgcaacacaaagccatattt |
29116689 |
T |
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