View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9504_low_35 (Length: 363)
Name: NF9504_low_35
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9504_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 65 - 347
Target Start/End: Original strand, 51530573 - 51530855
Alignment:
| Q |
65 |
tactgaaactaatacgttcacacatataataatttgtaaataaactaaatgtgctataaaatcttctgtacagggaagaataacagtactggaaatctaa |
164 |
Q |
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| T |
51530573 |
tactaaaactaatacgttgacacatataataatttgtaaataaactaaatgtgctataaaatcctctgtacagggaagaataacagtactggaaatctaa |
51530672 |
T |
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| Q |
165 |
gctctgatctaagaacatggctgagtgctgttcttgtgaatacagacacttgtttagaaggattacaaggattacaaagtacatttgcaaagagtgatgt |
264 |
Q |
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| T |
51530673 |
gctctgatctaagaacatggctcagtgctgttcttgtgaatacagacacttgtttagaaggattacaaggattacaaagtacatttgcaaagagtgatgt |
51530772 |
T |
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| Q |
265 |
atcaagcggtcttgatcgtgtaatgtcattggtgaagaagaatctttttgaagtagtcctcagcaacgatcaacttgcaactg |
347 |
Q |
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| T |
51530773 |
atcaagcggtcttgatcgtgtattgtcattggtgaagaagaatctttttgaagtagtcctcagcaacgatcaacttgcaactg |
51530855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 134 - 234
Target Start/End: Original strand, 51524458 - 51524558
Alignment:
| Q |
134 |
acagggaagaataacagtactggaaatctaagctctgatctaagaacatggctgagtgctgttcttgtgaatacagacacttgtttagaaggattacaag |
233 |
Q |
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|||| |||| ||||||| || ||||| |||| || ||||||||| |||||||||||||||||||||||| || ||||||| ||| ||||||||||| ||| |
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| T |
51524458 |
acagagaaggataacagcacaggaaaactaaactgtgatctaaggacatggctgagtgctgttcttgtgtatccagacacatgtatagaaggattagaag |
51524557 |
T |
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| Q |
234 |
g |
234 |
Q |
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| T |
51524558 |
g |
51524558 |
T |
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