View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9504_low_37 (Length: 351)
Name: NF9504_low_37
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9504_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 144 - 333
Target Start/End: Original strand, 27549202 - 27549391
Alignment:
| Q |
144 |
ttcattgtagcgaagacggaagaccaaacttatcatttaaaaagtaaagtggtatatata-ggcaggtatggggtcactttgggttgaacaaattgaaaa |
242 |
Q |
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| T |
27549202 |
ttcattgtagcgaagacggaagaccaaacttatcatt-aaaaagtaaagtggtatatataaggcaggtatggggtcactttgggttgaacaaattgaaaa |
27549300 |
T |
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| Q |
243 |
taatttttgtgtgatcccaaccacacaaaaataaacatcatttaattatttcaataataataaaaaatattcctttccttctatccttttc |
333 |
Q |
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| T |
27549301 |
taatttttgtgtgatcccaaccacacaaaaataaacatcatttaattatttcaataataataaaaaatattcctttccttctatccttttc |
27549391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 27549153 - 27549189
Alignment:
| Q |
112 |
gtatatcttttcaagaatgtcataaaaaattgttcat |
148 |
Q |
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| T |
27549153 |
gtatatcttttcaagaatgtcataaaaaattgttcat |
27549189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 310
Target Start/End: Complemental strand, 41542253 - 41542225
Alignment:
| Q |
282 |
atttaattatttcaataataataaaaaat |
310 |
Q |
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| T |
41542253 |
atttaattatttcaataataataaaaaat |
41542225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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