View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9504_low_39 (Length: 337)
Name: NF9504_low_39
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9504_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 24 - 325
Target Start/End: Original strand, 7558832 - 7559133
Alignment:
| Q |
24 |
taccagatctcttagagctcagaaaatcaataatccgttctgcatatttctcctggttaccacttaccatcgtttgaggttcgaaaatatggtatttagt |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7558832 |
taccagatctcttagagctcagaaaatcaataatccgttctgcatatttctcctggttaccacttaccatcgtttgaggttcgaaaatatggtatttagt |
7558931 |
T |
|
| Q |
124 |
attgacactctttcgcgtagctcattgaggatgaacaacaccaaagtttattaacttgattaatgaactagggtttagacctcttggtcatggaagctgt |
223 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7558932 |
attgacactctttcgcgtagctcattgaggatgaacaacaccaaagtttattaacttgattaatgaactagggtttagacctcttggtcatggaggctgt |
7559031 |
T |
|
| Q |
224 |
gatataattccgtgaaataccttgattatattttccatcatcagtccttgttttgaattcaaaaaccagagctttgacttcggcacgtttattaacttcc |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7559032 |
gatataattccgtgaaataccttgattatattttccatcatcggtccttgttttgaattcaaaaaccagagctttgacttcggcacatttattaacttcc |
7559131 |
T |
|
| Q |
324 |
ta |
325 |
Q |
| |
|
|| |
|
|
| T |
7559132 |
ta |
7559133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 104 - 325
Target Start/End: Original strand, 7562668 - 7562889
Alignment:
| Q |
104 |
tcgaaaatatggtatttagtattgacactctttcgcgtagctcattgaggatgaacaacaccaaagtttattaacttgattaatgaactagggtttagac |
203 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7562668 |
tcgaaaatatggtatttagtattgacactttttcgcgtagctcattgaggatgaacaacaccaaagtttattaacttgattaatgaactagggtttagac |
7562767 |
T |
|
| Q |
204 |
ctcttggtcatggaagctgtgatataattccgtgaaataccttgattatattttccatcatcagtccttgttttgaattcaaaaaccagagctttgactt |
303 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
7562768 |
ctcttggtcatggaggctgtgatataattccgtgaaataccttgattatattttccatcatctgtccttgttttgaattcaaaaaccagagctttgattt |
7562867 |
T |
|
| Q |
304 |
cggcacgtttattaacttccta |
325 |
Q |
| |
|
|||||| ||||||||||||||| |
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| T |
7562868 |
cggcacttttattaacttccta |
7562889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 110 - 233
Target Start/End: Original strand, 7594033 - 7594157
Alignment:
| Q |
110 |
atatggtatttagtattgacactctttcgcgtagctcattgaggatgaacaacaccaaagtttattaacttg-attaatgaactagggtttagacctctt |
208 |
Q |
| |
|
|||| |||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| ||| |
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| T |
7594033 |
atatagtatttagtattgagactctttcgcttggctcattgaggatgaacaacaccaaagtttattaacttgcattaatgaactggggcttagaccactt |
7594132 |
T |
|
| Q |
209 |
ggtcatggaagctgtgatataattc |
233 |
Q |
| |
|
|||||||| |||| |||||||||| |
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|
| T |
7594133 |
cgtcatggaggctgagatataattc |
7594157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 7593899 - 7593959
Alignment:
| Q |
24 |
taccagatctcttagagctcagaaaatcaataatccgttctgcatatttctcctggttacc |
84 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||| | |||||||||||||||||||||| |
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|
| T |
7593899 |
taccagatctctttgagctcagaaaatcaagaatccttgctgcatatttctcctggttacc |
7593959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 325
Target Start/End: Original strand, 7541839 - 7541886
Alignment:
| Q |
278 |
gaattcaaaaaccagagctttgacttcggcacgtttattaacttccta |
325 |
Q |
| |
|
||||||||| ||| ||||||||||||| ||| |||||||||||||||| |
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|
| T |
7541839 |
gaattcaaatacctgagctttgacttcagcaagtttattaacttccta |
7541886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 104 - 325
Target Start/End: Complemental strand, 8993040 - 8992819
Alignment:
| Q |
104 |
tcgaaaatatggtatttagtattgacactctttcgcgtagctcattgaggatgaacaacaccaaagtttattaacttgattaatgaactagggtttagac |
203 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8993040 |
tcgaaaatatggtatttagtattgacactttttcgcgtagctcattgaggatgaacaacaccaaagtttattaacttgattaatgaactagggtttagac |
8992941 |
T |
|
| Q |
204 |
ctcttggtcatggaagctgtgatataattccgtgaaataccttgattatattttccatcatcagtccttgttttgaattcaaaaaccagagctttgactt |
303 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
8992940 |
ctcttggtcatggaggctgtgatataattccgtgaaataccttgattatattttccatcatcagtccttgttttgaattcaaaaaccagagctttgaatt |
8992841 |
T |
|
| Q |
304 |
cggcacgtttattaacttccta |
325 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
8992840 |
cggcacgtttattaacttccta |
8992819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 110 - 233
Target Start/End: Complemental strand, 8968034 - 8967910
Alignment:
| Q |
110 |
atatggtatttagtattgacactctttcgcgtagctcattgaggatgaacaacaccaaagtttattaacttg-attaatgaactagggtttagacctctt |
208 |
Q |
| |
|
|||| |||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| | ||| |
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| T |
8968034 |
atatagtatttagcattgacactctttcgcttggctcattgaggatgaacaacaccaaagtttattaacttgcattaatgaactagggcttagaacactt |
8967935 |
T |
|
| Q |
209 |
ggtcatggaagctgtgatataattc |
233 |
Q |
| |
|
|||||||| |||| |||||||||| |
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|
| T |
8967934 |
cgtcatggaggctgagatataattc |
8967910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 8993150 - 8993070
Alignment:
| Q |
24 |
taccagatctcttagagctcagaaaatcaataatccgttctgcatatttctcctggttaccacttaccatcgtttgaggtt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8993150 |
taccagatctcttagagctcagaaaatcaataatcctttctgcatatttctcctggttaccacttaccatcgtttgaggtt |
8993070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 8968168 - 8968108
Alignment:
| Q |
24 |
taccagatctcttagagctcagaaaatcaataatccgttctgcatatttctcctggttacc |
84 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
8968168 |
taccagatctctttgagctcagaaaatcaagaatccttgctgcatatttctcctggttacc |
8968108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 107 - 233
Target Start/End: Complemental strand, 30742892 - 30742759
Alignment:
| Q |
107 |
aaaatatggtatttagtattgacactctttcgcgtagctcattgaggatgaacaacaccaaagtttattaa-cttgattaat------gaactagggttt |
199 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||| || |||||| |||||||||||| |
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|
| T |
30742892 |
aaaatatcgtatttagtattgacactctttcgcttagctcgttgaggatgaacaacaccaaagttcattaatctgcattaatgaactagaactagggttt |
30742793 |
T |
|
| Q |
200 |
agacctcttggtcatggaagctgtgatataattc |
233 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||| |
|
|
| T |
30742792 |
agaccacttggtcatggaggctgtgatataattc |
30742759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 30743012 - 30742968
Alignment:
| Q |
31 |
tctcttagagctcagaaaatcaataatccgttctgcatatttctc |
75 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||| |||||||| |
|
|
| T |
30743012 |
tctcttagagctcagaaaatcaagaatccttgctgcgtatttctc |
30742968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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