View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9504_low_43 (Length: 317)
Name: NF9504_low_43
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9504_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 26 - 303
Target Start/End: Complemental strand, 18104479 - 18104203
Alignment:
| Q |
26 |
catcaaataacacttacatttgaccataatcgtttattttattagaactaacacacatgtgtataacatgtgcgtatagcactcagatcctctctcacgg |
125 |
Q |
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| T |
18104479 |
catcaaataacacttacatttgaccataatcgtttattttgttagaactaacacacatgtgtataacatgtgcatatagcactcagatcctctctcacgg |
18104380 |
T |
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| Q |
126 |
tgttgcactgcagtaaaatattttttaactaacacaatataccatcgcatgaggtagcacttttcttcacgannnnnnnnnnnnnngttgtgccgctaca |
225 |
Q |
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| T |
18104379 |
tgttgcgctgcagtaaaatattttttaactaactcaatataccatcacatgaggtagcacttttctacac-aatttttcttttgttgttgtgccgctaca |
18104281 |
T |
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| Q |
226 |
ctgtgggagagaatcgtgcatatatggtagattattgtttagtcaatttgattggaacaattctcagaggttgagatt |
303 |
Q |
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| T |
18104280 |
ctgtgggagagaatcgtgcatatatggtagattattgtttagtcaatttgattggaacaattctcagaggttgagatt |
18104203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 18094450 - 18094360
Alignment:
| Q |
32 |
ataacacttacatttgaccataatcgtttattttattagaactaacacacatgtgtataacatgtgcgtatagcactcagatcctctctca |
122 |
Q |
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| T |
18094450 |
ataacacttacatttgaccctaatcgtttattttattagaactaacacacatgcgtataacatatgcaaataggactcagatcctctctca |
18094360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 236 - 303
Target Start/End: Complemental strand, 18094262 - 18094195
Alignment:
| Q |
236 |
gaatcgtgcatatatggtagattattgtttagtcaatttgattggaacaattctcagaggttgagatt |
303 |
Q |
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| T |
18094262 |
gaatcatgcatacatggtggattattgtttagtcaatttgattggaacaattctcacaggttgagatt |
18094195 |
T |
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