View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9504_low_45 (Length: 313)

Name: NF9504_low_45
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9504_low_45
NF9504_low_45
[»] chr7 (19 HSPs)
chr7 (154-301)||(4788074-4788235)
chr7 (55-103)||(4788324-4788372)
chr7 (1-53)||(16059456-16059508)
chr7 (1-53)||(41151149-41151201)
chr7 (10-53)||(18117056-18117099)
chr7 (10-53)||(21577210-21577253)
chr7 (10-53)||(35109668-35109711)
chr7 (1-54)||(48176375-48176428)
chr7 (1-53)||(38265340-38265392)
chr7 (10-53)||(38405266-38405309)
chr7 (180-261)||(42253830-42253911)
chr7 (17-53)||(34721811-34721847)
chr7 (1-53)||(45278429-45278481)
chr7 (266-305)||(1277911-1277950)
chr7 (266-305)||(33187914-33187953)
chr7 (272-305)||(9172486-9172519)
chr7 (230-267)||(31180092-31180129)
chr7 (185-261)||(38505464-38505540)
chr7 (185-261)||(43348358-43348434)
[»] chr2 (24 HSPs)
chr2 (1-53)||(40156017-40156069)
chr2 (1-53)||(2357178-2357230)
chr2 (1-53)||(5039397-5039449)
chr2 (1-57)||(25987765-25987821)
chr2 (10-53)||(13047263-13047306)
chr2 (13-53)||(6672908-6672948)
chr2 (260-305)||(14166934-14166979)
chr2 (3-48)||(36836434-36836479)
chr2 (9-53)||(2754162-2754206)
chr2 (1-53)||(10745335-10745387)
chr2 (1-53)||(26690131-26690183)
chr2 (180-267)||(36870133-36870222)
chr2 (5-53)||(44650370-44650418)
chr2 (224-305)||(11522248-11522333)
chr2 (1-55)||(4553662-4553716)
chr2 (180-261)||(13018608-13018689)
chr2 (230-268)||(39180999-39181037)
chr2 (264-305)||(3737294-3737335)
chr2 (260-305)||(5003195-5003240)
chr2 (185-261)||(4003303-4003379)
chr2 (1-53)||(7860249-7860301)
chr2 (262-294)||(27987634-27987666)
chr2 (262-294)||(28074167-28074199)
chr2 (1-53)||(30372783-30372835)
[»] chr8 (18 HSPs)
chr8 (1-53)||(19723288-19723340)
chr8 (180-268)||(1839942-1840030)
chr8 (10-54)||(6097540-6097584)
chr8 (259-305)||(41455223-41455269)
chr8 (1-53)||(4840117-4840169)
chr8 (9-53)||(22711486-22711530)
chr8 (185-262)||(27085223-27085301)
chr8 (1-53)||(27881091-27881143)
chr8 (1-53)||(28021272-28021324)
chr8 (235-305)||(31149849-31149925)
chr8 (265-305)||(31598489-31598529)
chr8 (230-268)||(8948548-8948586)
chr8 (23-53)||(11610257-11610287)
chr8 (176-258)||(21173990-21174072)
chr8 (185-261)||(23932687-23932763)
chr8 (258-294)||(28416240-28416276)
chr8 (1-49)||(29767169-29767217)
chr8 (13-53)||(32296754-32296794)
[»] chr4 (15 HSPs)
chr4 (1-53)||(50905725-50905777)
chr4 (1-53)||(51066470-51066522)
chr4 (12-53)||(39863892-39863933)
chr4 (1-53)||(2294813-2294865)
chr4 (1-53)||(8740425-8740477)
chr4 (10-50)||(30970496-30970536)
chr4 (10-53)||(36192518-36192561)
chr4 (10-53)||(46494510-46494553)
chr4 (243-305)||(55813694-55813760)
chr4 (185-261)||(30307247-30307323)
chr4 (10-50)||(51714077-51714117)
chr4 (180-261)||(33500390-33500471)
chr4 (213-267)||(48620183-48620237)
chr4 (260-305)||(27485311-27485356)
chr4 (185-261)||(29114363-29114440)
[»] chr3 (15 HSPs)
chr3 (1-53)||(7417775-7417827)
chr3 (1-53)||(8400832-8400884)
chr3 (10-53)||(35198742-35198785)
chr3 (9-47)||(50823681-50823719)
chr3 (9-47)||(50852141-50852179)
chr3 (180-261)||(3537078-3537159)
chr3 (1-50)||(39438922-39438971)
chr3 (176-261)||(48909003-48909088)
chr3 (262-305)||(32858799-32858842)
chr3 (10-45)||(50726109-50726144)
chr3 (10-45)||(50786704-50786739)
chr3 (10-53)||(55467976-55468019)
chr3 (263-304)||(7435684-7435725)
chr3 (1-50)||(52545301-52545350)
chr3 (1-53)||(22855864-22855916)
[»] chr1 (11 HSPs)
chr1 (1-53)||(20014435-20014487)
chr1 (10-50)||(4573359-4573399)
chr1 (1-53)||(21090092-21090144)
chr1 (1-53)||(30054545-30054597)
chr1 (10-53)||(15034432-15034475)
chr1 (10-53)||(30370172-30370215)
chr1 (1-51)||(33763357-33763407)
chr1 (224-262)||(47742445-47742483)
chr1 (272-305)||(52331028-52331061)
chr1 (185-261)||(36886745-36886821)
chr1 (13-53)||(45323983-45324023)
[»] chr5 (9 HSPs)
chr5 (1-50)||(20983106-20983155)
chr5 (10-53)||(17064300-17064343)
chr5 (260-305)||(7398848-7398893)
chr5 (176-258)||(35683606-35683688)
chr5 (256-305)||(6491147-6491196)
chr5 (256-305)||(6491392-6491441)
chr5 (230-267)||(12064108-12064145)
chr5 (1-46)||(37976530-37976575)
chr5 (8-53)||(41910803-41910848)
[»] chr6 (3 HSPs)
chr6 (10-53)||(14496329-14496372)
chr6 (10-53)||(35163862-35163905)
chr6 (274-305)||(13380521-13380552)
[»] scaffold0021 (1 HSPs)
scaffold0021 (1-53)||(107794-107846)
[»] scaffold1163 (1 HSPs)
scaffold1163 (185-258)||(1933-2006)
[»] scaffold0598 (1 HSPs)
scaffold0598 (185-261)||(9530-9606)
[»] scaffold0128 (1 HSPs)
scaffold0128 (185-261)||(26254-26330)


Alignment Details
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 154 - 301
Target Start/End: Complemental strand, 4788235 - 4788074
Alignment:
Q  154 tgtaaacttgtctttgaatttgtcattaagtctttgtttgcgagtttgaaatggaagagaaggaaaggccttgaagaaaaagaatgagtaagtggaagaa 253  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4788235 tgtaaacttgtctttgaatttgtcactaagtctttgtttgcgagtttgaaagggaagggaaggaaaggccttgaagaaaaagaatgagtaagtggaagaa 4788136  T
Q  254 ata--------------gaggactttgggggcttatttttcttcataatataaaatcatcct 301  Q
    |||              |||||||||||||||||||||||||||||||||||||||||||||    
T  4788135 atagatgacattggaaggaggactttgggggcttatttttcttcataatataaaatcatcct 4788074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 4788372 - 4788324
Alignment:
Q  55 tgttttagttttattcacacaagtgttttagttcaattaatgaaaaatt 103  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4788372 tgttttagttttatttacacaagtgttttagttcaattaatgaaaaatt 4788324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 16059456 - 16059508
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||  ||||||||||| ||||||||||||||||||||||||||||||||    
T  16059456 ctagcggggctcgaacccgggttctctcggattcaagacctgtctttttacca 16059508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 41151201 - 41151149
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||  ||||||||||| ||||||||||||||||||||||||||||||||    
T  41151201 ctagcggggctcgaacccgggttctctcggattcaagacctgtctttttacca 41151149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 18117056 - 18117099
Alignment:
Q  10 ctcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  18117056 ctcgaacccgggttctctcggattcaagacctgtctttttacca 18117099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 21577210 - 21577253
Alignment:
Q  10 ctcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  21577210 ctcgaacccgggttctctcggattcaagacctgtctttttacca 21577253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 35109711 - 35109668
Alignment:
Q  10 ctcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  35109711 ctcgaacccgggttctctcggattcaagacctgtctttttacca 35109668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 48176428 - 48176375
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttaccat 54  Q
    |||||||  |||||||||||||||||||||||| |||| |||||||||||||||    
T  48176428 ctagcggggctcgaacccggattctctcggatttaagatctgtctttttaccat 48176375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 38265340 - 38265392
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||  ||||||||| | ||||||||||||||||||||||||||||||||    
T  38265340 ctagcggggctcgaacccaggttctctcggattcaagacctgtctttttacca 38265392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 38405266 - 38405309
Alignment:
Q  10 ctcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    ||||||| || |||||||||||||||||||||||||||||||||    
T  38405266 ctcgaactcgaattctctcggattcaagacctgtctttttacca 38405309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 42253830 - 42253911
Alignment:
Q  180 taagtctttgtttgcgagtttgaaatggaagagaaggaaaggccttgaagaaaaagaatgagtaagtggaagaaatagagga 261  Q
    |||| |||||||||||| |||| |  ||||| ||||||||||| | | | |||| |||| ||||||||||||||||||||||    
T  42253830 taaggctttgtttgcgaatttggaggggaagggaaggaaaggcttgggaaaaaaggaataagtaagtggaagaaatagagga 42253911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 34721847 - 34721811
Alignment:
Q  17 ccggattctctcggattcaagacctgtctttttacca 53  Q
    |||| ||||||||||||||||||||||||||||||||    
T  34721847 ccgggttctctcggattcaagacctgtctttttacca 34721811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 45278481 - 45278429
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||  ||||||||||| || ||||||||||||||||| |||||||||||    
T  45278481 ctagcggggctcgaacccgggttatctcggattcaagacctatctttttacca 45278429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 305
Target Start/End: Original strand, 1277911 - 1277950
Alignment:
Q  266 gggggcttatttttcttcataatataaaatcatcctcatt 305  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  1277911 gggggcttatttttcttcaaaatataaaaccatcctcatt 1277950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 305
Target Start/End: Complemental strand, 33187953 - 33187914
Alignment:
Q  266 gggggcttatttttcttcataatataaaatcatcctcatt 305  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  33187953 gggggcttgtttttcttcaaaatataaaatcatcctcatt 33187914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 305
Target Start/End: Original strand, 9172486 - 9172519
Alignment:
Q  272 ttatttttcttcataatataaaatcatcctcatt 305  Q
    |||||||||||||||||| |||||||||||||||    
T  9172486 ttatttttcttcataatacaaaatcatcctcatt 9172519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 31180129 - 31180092
Alignment:
Q  230 aaaaagaatgagtaagtggaagaaatagaggactttgg 267  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  31180129 aaaaggaatgagtaagtggaagaaatagaggacattgg 31180092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 261
Target Start/End: Complemental strand, 38505540 - 38505464
Alignment:
Q  185 ctttgtttgcgagtttgaaatggaagagaaggaaaggccttgaagaaaaagaatgagtaagtggaagaaatagagga 261  Q
    ||||||||||||||||| |  ||||| || || ||||| | | | |||| ||||||| |||||||||||||||||||    
T  38505540 ctttgtttgcgagtttggaggggaagggaggggaaggcttgggaaaaaaggaatgagcaagtggaagaaatagagga 38505464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 261
Target Start/End: Complemental strand, 43348434 - 43348358
Alignment:
Q  185 ctttgtttgcgagtttgaaatggaagagaaggaaaggccttgaagaaaaagaatgagtaagtggaagaaatagagga 261  Q
    |||||||||| ||||||||| ||||||||||| |||   | | | |||||||||||  ||||| |||||||||||||    
T  43348434 ctttgtttgcaagtttgaaagggaagagaagggaagatttgggaaaaaaagaatgatcaagtgaaagaaatagagga 43348358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 40156069 - 40156017
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  40156069 ctagcggggctcgaacccggattctctcggattcaagacctgtctttttacca 40156017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2357178 - 2357230
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||| ||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  2357178 ctagtggaactcgaacccgggttctctcggattcaagacctgtcattttacca 2357230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 5039449 - 5039397
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||| ||||||||||  ||||||||||||||||||||||||||||||||    
T  5039449 ctagcggagctcgaacccgagttctctcggattcaagacctgtctttttacca 5039397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 25987765 - 25987821
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttaccattgt 57  Q
    |||||||  ||||||||||  ||||||||||||||||||||||||||||||||||||    
T  25987765 ctagcggggctcgaacccgagttctctcggattcaagacctgtctttttaccattgt 25987821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 13047263 - 13047306
Alignment:
Q  10 ctcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  13047263 ctcgaacccggattctctcgaattcaagacctgtctttttacca 13047306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 6672908 - 6672948
Alignment:
Q  13 gaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  6672908 gaacccgggttctctcggattcaagacctgtctttttacca 6672948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 14166934 - 14166979
Alignment:
Q  260 gactttgggggcttatttttcttcataatataaaatcatcctcatt 305  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||    
T  14166934 gactttgcgggattatttttcttcataatataaaatcatcatcatt 14166979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 36836434 - 36836479
Alignment:
Q  3 agcggaactcgaacccggattctctcggattcaagacctgtctttt 48  Q
    ||||| |||||||| ||| |||||||||||||||||||||||||||    
T  36836434 agcgggactcgaactcgggttctctcggattcaagacctgtctttt 36836479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 2754162 - 2754206
Alignment:
Q  9 actcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    ||||||| |||| ||||||||||||||||||||||| ||||||||    
T  2754162 actcgaatccgggttctctcggattcaagacctgtcattttacca 2754206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 10745335 - 10745387
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||  |||| |||||| |||||||| |||||||||||||||||||||||    
T  10745335 ctagcggggctcggacccgggttctctcgaattcaagacctgtctttttacca 10745387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 26690183 - 26690131
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    ||||||| |||||||||| |||||||||| ||| || ||||||||||||||||    
T  26690183 ctagcgggactcgaacccagattctctcgaatttaaaacctgtctttttacca 26690131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 36870133 - 36870222
Alignment:
Q  180 taagtctttgtttgcgagtttgaaatggaagagaaggaaaggccttgaagaaaaa---gaatgagtaagtggaagaaatagaggactttgg 267  Q
    |||| |||||||||||||||||||  ||||| |||||||| | |||||| |||||   ||| |||| ||||||||||||||||||| ||||    
T  36870133 taaggctttgtttgcgagtttgaaggggaagggaaggaaatg-cttgaaaaaaaaaaggaaggagtgagtggaagaaatagaggacattgg 36870222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 44650418 - 44650370
Alignment:
Q  5 cggaactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||| ||||||  ||| ||||||||||||||||||||||||||||||||    
T  44650418 cggagctcgaaatcgggttctctcggattcaagacctgtctttttacca 44650370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 305
Target Start/End: Complemental strand, 11522333 - 11522248
Alignment:
Q  224 ttgaagaaaaagaatgagtaagtggaagaaatagaggactttg---ggggcttatttttcttc-ataatataaaatcatcctcatt 305  Q
    ||||| |||| ||| |||||| ||||||||||||||||| |||   ||||||||||||||||| | ||||||||| | ||||||||    
T  11522333 ttgaaaaaaaggaaggagtaaatggaagaaatagaggacattgggaggggcttatttttcttcaaaaatataaaaccctcctcatt 11522248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 4553662 - 4553716
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttaccatt 55  Q
    ||||| ||||||||||| | | ||||||| ||||||||| |||||||||||||||    
T  4553662 ctagctgaactcgaacctgaaatctctcgaattcaagacatgtctttttaccatt 4553716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 13018689 - 13018608
Alignment:
Q  180 taagtctttgtttgcgagtttgaaatggaagagaaggaaaggccttgaagaaaaag-aatgagtaagtggaagaaatagagga 261  Q
    |||| ||||||||||||||||| || ||||| || || ||||| ||||  |||||| |||||||||||||||||||| |||||    
T  13018689 taaggctttgtttgcgagtttggaagggaagggaggggaaggc-ttgagaaaaaaggaatgagtaagtggaagaaatggagga 13018608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 268
Target Start/End: Original strand, 39180999 - 39181037
Alignment:
Q  230 aaaaagaatgagtaagtggaagaaatagaggactttggg 268  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  39180999 aaaaggaaggagtaagtggaagaaatagaggactttggg 39181037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 305
Target Start/End: Complemental strand, 3737335 - 3737294
Alignment:
Q  264 ttgggggcttatttttcttcataatataaaatcatcctcatt 305  Q
    ||||||| | |||||||||||||||| |||||||||||||||    
T  3737335 ttgggggttaatttttcttcataatacaaaatcatcctcatt 3737294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 5003240 - 5003195
Alignment:
Q  260 gactttgggggcttatttttcttcataatataaaatcatcctcatt 305  Q
    ||||||| ||| | ||||||||| ||||||||||||||||||||||    
T  5003240 gactttgagggttcatttttctttataatataaaatcatcctcatt 5003195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 4003303 - 4003379
Alignment:
Q  185 ctttgtttgcgagtttgaaatggaagagaaggaaaggccttgaagaaaaagaatgagtaagtggaagaaatagagga 261  Q
    ||||||||| ||||||| | |||||| || || | ||| ||| | |||| ||||||| |||||||||||||||||||    
T  4003303 ctttgtttgtgagtttggagtggaagggaggggagggctttggaaaaaaggaatgagcaagtggaagaaatagagga 4003379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 7860249 - 7860301
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||  ||| ||||| | ||||||||||||||||||||||| ||||||||    
T  7860249 ctagcggggctcaaacccaggttctctcggattcaagacctgtcattttacca 7860301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 27987634 - 27987666
Alignment:
Q  262 ctttgggggcttatttttcttcataatataaaa 294  Q
    ||||||||||||||||||||||| |||||||||    
T  27987634 ctttgggggcttatttttcttcaaaatataaaa 27987666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 28074167 - 28074199
Alignment:
Q  262 ctttgggggcttatttttcttcataatataaaa 294  Q
    ||||||||||||||||||||||| |||||||||    
T  28074167 ctttgggggcttatttttcttcaaaatataaaa 28074199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 30372783 - 30372835
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||| ||||||||| |  ||||||| ||||||||||| |||||||||||    
T  30372783 ctagcggagctcgaacccaggatctctcgaattcaagacctatctttttacca 30372835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 19723340 - 19723288
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||  ||||||||||| ||||||||||||||||||||||||||||||||    
T  19723340 ctagcggggctcgaacccgggttctctcggattcaagacctgtctttttacca 19723288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 268
Target Start/End: Complemental strand, 1840030 - 1839942
Alignment:
Q  180 taagtctttgtttgcgagtttgaaatggaagagaaggaaaggccttgaagaaaaagaatgagtaagtggaagaaatagaggactttggg 268  Q
    |||| ||||||||||||||||| |  |||||  |||||||||| | ||| || | ||| |||||||||||||||||||||||| |||||    
T  1840030 taaggctttgtttgcgagtttggaggggaaggaaaggaaaggcttggaaaaataggaaggagtaagtggaagaaatagaggacattggg 1839942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 6097584 - 6097540
Alignment:
Q  10 ctcgaacccggattctctcggattcaagacctgtctttttaccat 54  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||    
T  6097584 ctcgaactcggattctctcgaattcaagacctgtctttttaccat 6097540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 41455223 - 41455269
Alignment:
Q  259 ggactttgggggcttatttttcttcataatataaaatcatcctcatt 305  Q
    |||||||||||||||||||||||||| ||||||||| | ||||||||    
T  41455223 ggactttgggggcttatttttcttcaaaatataaaaccctcctcatt 41455269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 4840169 - 4840117
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||  ||||||||||| ||||||||||||||| |||| |||||||||||    
T  4840169 ctagcggggctcgaacccgggttctctcggattcaaaacctatctttttacca 4840117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 22711530 - 22711486
Alignment:
Q  9 actcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||| ||||||  ||||||||||||||||||||||||||||||||    
T  22711530 actcaaacccgagttctctcggattcaagacctgtctttttacca 22711486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 262
Target Start/End: Original strand, 27085223 - 27085301
Alignment:
Q  185 ctttgtttgcgagtttgaaatggaagagaaggaaaggccttgaagaaaaa--gaatgagtaagtggaagaaatagaggac 262  Q
    ||||||||||||||||| |  |||||| |||||||  |||||  ||||||  ||||||||||||||||||||||||||||    
T  27085223 ctttgtttgcgagtttggaggggaagacaaggaaaa-ccttggggaaaaaaggaatgagtaagtggaagaaatagaggac 27085301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 27881091 - 27881143
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||  ||||||||||| ||||||| ||||||||||||||| ||||||||    
T  27881091 ctagcggggctcgaacccgggttctctcagattcaagacctgtcattttacca 27881143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 28021272 - 28021324
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||  ||||||||||| ||||||| ||||||||||||||| ||||||||    
T  28021272 ctagcggggctcgaacccgggttctctcagattcaagacctgtcattttacca 28021324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 31149849 - 31149925
Alignment:
Q  235 gaatgagtaagtggaagaaatagagg-----actttgggggctta-tttttcttcataatataaaatcatcctcatt 305  Q
    ||||||| ||||||||||||||||||     |||||||||| ||| ||||||||| ||||| |||||||||||||||    
T  31149849 gaatgagcaagtggaagaaatagaggggtagactttggggggttaatttttcttcctaatacaaaatcatcctcatt 31149925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 31598529 - 31598489
Alignment:
Q  265 tgggggcttatttttcttcataatataaaatcatcctcatt 305  Q
    |||||||||||||||||||| ||||||||||| ||||||||    
T  31598529 tgggggcttatttttcttcaaaatataaaatcctcctcatt 31598489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 268
Target Start/End: Original strand, 8948548 - 8948586
Alignment:
Q  230 aaaaagaatgagtaagtggaagaaatagaggactttggg 268  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  8948548 aaaaggaatgattaagtggaagaaatagaggactttggg 8948586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 11610287 - 11610257
Alignment:
Q  23 tctctcggattcaagacctgtctttttacca 53  Q
    |||||||||||||||||||||||||||||||    
T  11610287 tctctcggattcaagacctgtctttttacca 11610257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 258
Target Start/End: Complemental strand, 21174072 - 21173990
Alignment:
Q  176 tcattaagtctttgtttgcgagtttgaaatggaagagaaggaaaggccttgaagaaaaagaatgagtaagtggaagaaataga 258  Q
    |||||||| ||||||||||||||||| | |||||| || || || || | | | |||| ||||||| ||||||||||||||||    
T  21174072 tcattaaggctttgtttgcgagtttggagtggaagggaggggaatgcttaggaaaaaaggaatgagcaagtggaagaaataga 21173990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 261
Target Start/End: Complemental strand, 23932763 - 23932687
Alignment:
Q  185 ctttgtttgcgagtttgaaatggaagagaaggaaaggccttgaagaaaaagaatgagtaagtggaagaaatagagga 261  Q
    ||||||||||||||||| |  ||||| ||||| ||||| | | | |||| |||| | ||||||||||||||||||||    
T  23932763 ctttgtttgcgagtttggaggggaagggaagggaaggcttgggaaaaaaggaataaataagtggaagaaatagagga 23932687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 28416276 - 28416240
Alignment:
Q  258 aggactttgggggcttatttttcttcataatataaaa 294  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  28416276 aggactttggggggttatttttcttcaaaatataaaa 28416240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29767217 - 29767169
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtcttttt 49  Q
    |||||||  ||||| ||||| ||||||| ||||||||||||||||||||    
T  29767217 ctagcggggctcgaccccgggttctctcagattcaagacctgtcttttt 29767169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 32296754 - 32296794
Alignment:
Q  13 gaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||| |||||||  |||||||||||||||||||||||    
T  32296754 gaacccgggttctctcaaattcaagacctgtctttttacca 32296794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 50905777 - 50905725
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||  ||||||||| ||||||||||||||||||||||||||||||||||    
T  50905777 ctagcggggctcgaacccagattctctcggattcaagacctgtctttttacca 50905725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 51066522 - 51066470
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||| ||||||||||  ||||||||||||||||||||||||||||||||    
T  51066522 ctagcggagctcgaacccgagttctctcggattcaagacctgtctttttacca 51066470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 39863892 - 39863933
Alignment:
Q  12 cgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  39863892 cgaacccgggttctctcggattcaagacctgtctttttacca 39863933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2294813 - 2294865
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||| ||||||||||||  |||||||| |||||||||||||||||||||||    
T  2294813 ctagcgaaactcgaacccgagttctctcgaattcaagacctgtctttttacca 2294865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 8740477 - 8740425
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||  |||||||||||  |||||||||||||||||||||||||||||||    
T  8740477 ctagcggggctcgaacccgggatctctcggattcaagacctgtctttttacca 8740425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 30970496 - 30970536
Alignment:
Q  10 ctcgaacccggattctctcggattcaagacctgtcttttta 50  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  30970496 ctcgaacccggattctctcggattcaagacctgtcatttta 30970536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 36192561 - 36192518
Alignment:
Q  10 ctcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    
T  36192561 ctcgaacccgggttctctcgaattcaagacctgtctttttacca 36192518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 46494510 - 46494553
Alignment:
Q  10 ctcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||    
T  46494510 ctcgaacccgggttctctcggattcaagacctgtcattttacca 46494553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 305
Target Start/End: Complemental strand, 55813760 - 55813694
Alignment:
Q  243 aagtggaagaaatagag----gactttgggggcttatttttcttcataatataaaatcatcctcatt 305  Q
    |||||||||||||||||    || || ||||||||||||||||||| ||||||||||| ||||||||    
T  55813760 aagtggaagaaatagagaggggatttagggggcttatttttcttcaaaatataaaatcttcctcatt 55813694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 30307247 - 30307323
Alignment:
Q  185 ctttgtttgcgagtttgaaatggaagagaaggaaaggccttgaagaaaaagaatgagtaagtggaagaaatagagga 261  Q
    ||||||||||||||||| |  | || |||||||||| | | ||| |||| ||| |||||||||||||||||||||||    
T  30307247 ctttgtttgcgagtttggagggcaaaagaaggaaagacttggaaaaaaaggaaggagtaagtggaagaaatagagga 30307323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 51714077 - 51714117
Alignment:
Q  10 ctcgaacccggattctctcggattcaagacctgtcttttta 50  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  51714077 ctcgaacccgggttctctcggattcaagacctgtcatttta 51714117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 33500390 - 33500471
Alignment:
Q  180 taagtctttgtttgcgagtttgaaatggaagagaaggaaaggccttgaagaaaaag-aatgagtaagtggaagaaatagagga 261  Q
    |||| ||||||||||||||||| || ||||| || || ||||| ||||  |||||| |||||| |||||||||||||||||||    
T  33500390 taaggctttgtttgcgagtttggaagggaagggaggggaaggc-ttgagaaaaaaggaatgagcaagtggaagaaatagagga 33500471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 267
Target Start/End: Original strand, 48620183 - 48620237
Alignment:
Q  213 aaggaaaggccttgaagaaaaagaatgagtaagtggaagaaatagaggactttgg 267  Q
    |||||||||| | ||| |||| ||| |||||||||||||||||||||||| ||||    
T  48620183 aaggaaaggcttggaaaaaaaggaaggagtaagtggaagaaatagaggacattgg 48620237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 27485356 - 27485311
Alignment:
Q  260 gactttgggggcttatttttcttcataatataaaatcatcctcatt 305  Q
    ||||||||||| | |||||||||||||||| |||||| ||||||||    
T  27485356 gactttgggggttcatttttcttcataatacaaaatcctcctcatt 27485311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 261
Target Start/End: Complemental strand, 29114440 - 29114363
Alignment:
Q  185 ctttgtttgcgagtttgaaatggaagagaaggaaaggccttgaagaaaaag-aatgagtaagtggaagaaatagagga 261  Q
    ||||||||||||||||| || ||||| || || ||||| | | | |||||| ||| ||||||||||||||||||||||    
T  29114440 ctttgtttgcgagtttggaagggaagggaggggaaggcttgggaaaaaaaggaataagtaagtggaagaaatagagga 29114363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 7417827 - 7417775
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||  ||||||||||| ||||||||||||||||||||||||||||||||    
T  7417827 ctagcggggctcgaacccgggttctctcggattcaagacctgtctttttacca 7417775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 8400884 - 8400832
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||  ||||||||||| ||||||||||||||||||||||||||||||||    
T  8400884 ctagcggggctcgaacccgggttctctcggattcaagacctgtctttttacca 8400832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 35198785 - 35198742
Alignment:
Q  10 ctcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  35198785 ctcgaacccgggttctctcggattcaagacctgtctttttacca 35198742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 50823719 - 50823681
Alignment:
Q  9 actcgaacccggattctctcggattcaagacctgtcttt 47  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  50823719 actcgaacccggattctctcggattcaagacttgtcttt 50823681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 50852141 - 50852179
Alignment:
Q  9 actcgaacccggattctctcggattcaagacctgtcttt 47  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  50852141 actcgaacccggattctctcggattcaagacttgtcttt 50852179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 3537078 - 3537159
Alignment:
Q  180 taagtctttgtttgcgagtttgaaatggaagagaaggaaaggccttgaagaaaaagaatgagtaagtggaagaaatagagga 261  Q
    |||| ||||||||||||||||| |  ||||| || || ||||| ||  | |||| |||||||||||||||||||||||||||    
T  3537078 taagactttgtttgcgagtttggaggggaagggaggggaaggctttagaaaaaaggaatgagtaagtggaagaaatagagga 3537159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 39438922 - 39438971
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtcttttta 50  Q
    ||||||||| | ||||| |||||||||||||||||||| |||||||||||    
T  39438922 ctagcggaatttgaacctggattctctcggattcaagatctgtcttttta 39438971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 261
Target Start/End: Complemental strand, 48909088 - 48909003
Alignment:
Q  176 tcattaagtctttgtttgcgagtttgaaatggaagagaaggaaaggccttgaagaaaaagaatgagtaagtggaagaaatagagga 261  Q
    |||||||| |||||||||| |||||| |  ||||| || || ||| | | ||| ||||||||| ||||||||||||||||||||||    
T  48909088 tcattaaggctttgtttgcaagtttggaggggaagggaggggaagacttggaaaaaaaagaataagtaagtggaagaaatagagga 48909003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 305
Target Start/End: Original strand, 32858799 - 32858842
Alignment:
Q  262 ctttgggggcttatttttcttcataatataaaatcatcctcatt 305  Q
    ||||||||| | ||||||||||||||||||||||| ||||||||    
T  32858799 ctttgggggttcatttttcttcataatataaaatcctcctcatt 32858842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 50726109 - 50726144
Alignment:
Q  10 ctcgaacccggattctctcggattcaagacctgtct 45  Q
    |||||||||| |||||||||||||||||||||||||    
T  50726109 ctcgaacccgaattctctcggattcaagacctgtct 50726144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 50786739 - 50786704
Alignment:
Q  10 ctcgaacccggattctctcggattcaagacctgtct 45  Q
    |||||||||| |||||||||||||||||||||||||    
T  50786739 ctcgaacccgaattctctcggattcaagacctgtct 50786704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 55468019 - 55467976
Alignment:
Q  10 ctcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||||||||||||||| ||||||||| |||| ||||||||    
T  55468019 ctcgaacccggattctctcgaattcaagacatgtcattttacca 55467976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 7435725 - 7435684
Alignment:
Q  263 tttgggggcttatttttcttcataatataaaatcatcctcat 304  Q
    |||||||||| | ||||||||||||||||||||| |||||||    
T  7435725 tttgggggctaacttttcttcataatataaaatcctcctcat 7435684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 52545350 - 52545301
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtcttttta 50  Q
    |||||||  |||||||||| ||| |||||||||||||||||||| |||||    
T  52545350 ctagcggggctcgaacccgaattttctcggattcaagacctgtcatttta 52545301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 22855916 - 22855864
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||  |||||||| || |||||||| ||| |||||||||||||||||||    
T  22855916 ctagcggggctcgaacctgggttctctcgaatttaagacctgtctttttacca 22855864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 20014487 - 20014435
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    ||||||| |||||||||||| ||||||||||||||||| ||||||||||||||    
T  20014487 ctagcgggactcgaacccgggttctctcggattcaagatctgtctttttacca 20014435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 4573399 - 4573359
Alignment:
Q  10 ctcgaacccggattctctcggattcaagacctgtcttttta 50  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  4573399 ctcgaacccgggttctctcggattcaagacctgtcttttta 4573359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 21090144 - 21090092
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||  |||||||||| ||||||||| |||||||||||||| ||||||||    
T  21090144 ctagcggggctcgaacccgaattctctcgaattcaagacctgtcattttacca 21090092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 30054545 - 30054597
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||  ||||||||||| |||||||||||||||||| || ||||||||||    
T  30054545 ctagcggggctcgaacccgggttctctcggattcaagacttgactttttacca 30054597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 15034475 - 15034432
Alignment:
Q  10 ctcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||| || |||| |||||||||||||||||||||||||||    
T  15034475 ctcgaacctgggttctttcggattcaagacctgtctttttacca 15034432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 30370172 - 30370215
Alignment:
Q  10 ctcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||||||||||||||| |||||| || |||||||||||||    
T  30370172 ctcgaacccggattctctcgaattcaaaacttgtctttttacca 30370215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 33763357 - 33763407
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttac 51  Q
    |||||||  ||||||||  |||||||||| |||||||||||||||||||||    
T  33763357 ctagcggggctcgaacctagattctctcgaattcaagacctgtctttttac 33763407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 262
Target Start/End: Original strand, 47742445 - 47742483
Alignment:
Q  224 ttgaagaaaaagaatgagtaagtggaagaaatagaggac 262  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  47742445 ttgaaaaaaaagaaggagtaagtggaagaaatagaggac 47742483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 305
Target Start/End: Original strand, 52331028 - 52331061
Alignment:
Q  272 ttatttttcttcataatataaaatcatcctcatt 305  Q
    |||||||||||||||||| |||||||||||||||    
T  52331028 ttatttttcttcataatacaaaatcatcctcatt 52331061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 36886745 - 36886821
Alignment:
Q  185 ctttgtttgcgagtttgaaatggaagagaaggaaaggccttgaagaaaaagaatgagtaagtggaagaaatagagga 261  Q
    ||||||||||||||||| |  ||||| || || ||||| | | | |||| ||||||| |||||||||||||||||||    
T  36886745 ctttgtttgcgagtttggaggggaagggaggggaaggcttgggaaaaaaggaatgagcaagtggaagaaatagagga 36886821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 45324023 - 45323983
Alignment:
Q  13 gaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||| | ||||||||||||||||||||||| ||||||||    
T  45324023 gaacccaggttctctcggattcaagacctgtcgttttacca 45323983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 20983106 - 20983155
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtcttttta 50  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||||||    
T  20983106 ctagcggggctcgaacccggattctcttggattcaagacctgtcttttta 20983155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 17064343 - 17064300
Alignment:
Q  10 ctcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||    
T  17064343 ctcgaacccgggttctctcggattcaagacctgtcattttacca 17064300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 7398893 - 7398848
Alignment:
Q  260 gactttgggggcttatttttcttcataatataaaatcatcctcatt 305  Q
    ||||||||||||| |||||||||||||||  |||||||||||||||    
T  7398893 gactttgggggctcatttttcttcataattcaaaatcatcctcatt 7398848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 258
Target Start/End: Complemental strand, 35683688 - 35683606
Alignment:
Q  176 tcattaagtctttgtttgcgagtttgaaatggaagagaaggaaaggccttgaagaaaaagaatgagtaagtggaagaaataga 258  Q
    |||||||| |||||||||||||||||||  ||||| || || ||||  | | | |||| ||||||| ||||||||||||||||    
T  35683688 tcattaaggctttgtttgcgagtttgaaggggaagggaggggaaggtttaggaaaaaaggaatgagcaagtggaagaaataga 35683606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 6491147 - 6491196
Alignment:
Q  256 agaggactttgggggcttatttttcttcataatataaaatcatcctcatt 305  Q
    ||||| ||||||||| | |||||||||||||||| |||||| ||||||||    
T  6491147 agagggctttgggggttcatttttcttcataatacaaaatcttcctcatt 6491196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 6491441 - 6491392
Alignment:
Q  256 agaggactttgggggcttatttttcttcataatataaaatcatcctcatt 305  Q
    ||||| ||||||||| | |||||||||||||||| |||||| ||||||||    
T  6491441 agagggctttgggggttcatttttcttcataatacaaaatcttcctcatt 6491392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 12064145 - 12064108
Alignment:
Q  230 aaaaagaatgagtaagtggaagaaatagaggactttgg 267  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  12064145 aaaaagaatgagtaagtggaagaaatagatgacattgg 12064108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37976575 - 37976530
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctt 46  Q
    |||||||  ||||||||| | |||||||||||||||||||||||||    
T  37976575 ctagcggggctcgaacccaggttctctcggattcaagacctgtctt 37976530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 41910848 - 41910803
Alignment:
Q  8 aactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    ||||| |||||  |||||||| ||||||||||||||||||||||||    
T  41910848 aactcaaacccaaattctctcagattcaagacctgtctttttacca 41910803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 14496372 - 14496329
Alignment:
Q  10 ctcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    ||||||||||| |||||||||||||||||||| |||||||||||    
T  14496372 ctcgaacccgggttctctcggattcaagacctttctttttacca 14496329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 35163862 - 35163905
Alignment:
Q  10 ctcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    ||||||||| | ||||||||||||||||||||||||||||||||    
T  35163862 ctcgaaccctggttctctcggattcaagacctgtctttttacca 35163905  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 305
Target Start/End: Original strand, 13380521 - 13380552
Alignment:
Q  274 atttttcttcataatataaaatcatcctcatt 305  Q
    ||||||||||||||||||||||||||||||||    
T  13380521 atttttcttcataatataaaatcatcctcatt 13380552  T

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Target: scaffold0021 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 107794 - 107846
Alignment:
Q  1 ctagcggaactcgaacccggattctctcggattcaagacctgtctttttacca 53  Q
    |||||||  ||||||| ||| |||||||| |||||||||||||||||||||||    
T  107794 ctagcggggctcgaactcgggttctctcgaattcaagacctgtctttttacca 107846  T

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Target: scaffold1163 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 1933 - 2006
Alignment:
Q  185 ctttgtttgcgagtttgaaatggaagagaaggaaaggccttgaagaaaaagaatgagtaagtggaagaaataga 258  Q
    ||||||||||||||||| |  ||||| ||||| ||| | ||||| |||| ||| ||| ||||||||||||||||    
T  1933 ctttgtttgcgagtttggaggggaagggaagggaagactttgaaaaaaaggaaggagcaagtggaagaaataga 2006  T

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Target: scaffold0598 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 261
Target Start/End: Complemental strand, 9606 - 9530
Alignment:
Q  185 ctttgtttgcgagtttgaaatggaagagaaggaaaggccttgaagaaaaagaatgagtaagtggaagaaatagagga 261  Q
    ||||||||||||||||| |  ||||| ||||||||| | | ||| |||| ||| |||||||| ||||||| ||||||    
T  9606 ctttgtttgcgagtttggaggggaagtgaaggaaagacttagaaaaaaaggaaggagtaagtagaagaaaaagagga 9530  T

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Target: scaffold0128 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 26254 - 26330
Alignment:
Q  185 ctttgtttgcgagtttgaaatggaagagaaggaaaggccttgaagaaaaagaatgagtaagtggaagaaatagagga 261  Q
    |||||||| ||||||||||  ||||| || || ||||| | | | |||| |||| ||||||||||||||||||||||    
T  26254 ctttgtttacgagtttgaaggggaagggaggggaaggcttgggaaaaaaggaataagtaagtggaagaaatagagga 26330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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