View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9504_low_50 (Length: 301)
Name: NF9504_low_50
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9504_low_50 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 301
Target Start/End: Complemental strand, 24890144 - 24889859
Alignment:
| Q |
16 |
gaaatgggagggataatagtgaacatgtcttctggttggggaagatcaggtgcagcacttgtagcaccttattctgcatccaaatgggcaattgaaggac |
115 |
Q |
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| T |
24890144 |
gaaatgggagggataatagtgaacatgtcttctggttggggaagatcaggtgcagcacttgtagcaccttattgtgcatccaaatgggcaattgaaggac |
24890045 |
T |
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| Q |
116 |
tcactaagtctgttgctgaagagttgccgaaaggaatggcagtagtggcactcaatccaggagtcatcaacactgacatgcttgcttcatgctatggtgc |
215 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24890044 |
tcactaagtctgttgctgaagagttgcctaaaggaatggcagtagtggcactgaatccaggagtcatcaacactgacatgcttgcttcatgctatggtgc |
24889945 |
T |
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| Q |
216 |
ttcctcatcgctttatcaatccccagaatcatgggattcagaggcagccaccaagatactcaatcttacacctgcagacaatggtg |
301 |
Q |
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| T |
24889944 |
ttcctcatcgctttatcaatccccagaatcatgggcttcagaggcagccaccaagatactcaatcttacacctgcagacaatggtg |
24889859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 21 - 300
Target Start/End: Complemental strand, 26560680 - 26560401
Alignment:
| Q |
21 |
gggagggataatagtgaacatgtcttctggttggggaagatcaggtgcagcacttgtagcaccttattctgcatccaaatgggcaattgaaggactcact |
120 |
Q |
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| T |
26560680 |
gggagggataatagtgaacatgtcttcaggttggggaagatcagttgctgcacttgtagcaccttactgtgtatccaaatgggcaattgaaggacttacc |
26560581 |
T |
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| Q |
121 |
aagtctgttgctgaagagttgccgaaaggaatggcagtagtggcactcaatccaggagtcatcaacactgacatgcttgcttcatgctatggtgcttcct |
220 |
Q |
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| T |
26560580 |
aagtctgttgttgaagagttgcctaaagtaatggcagtggtggcactcaatccaggggtcatcaacactaacatgcttgctttttgctatggtgcttcct |
26560481 |
T |
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| Q |
221 |
catcgctttatcaatccccagaatcatgggattcagaggcagccaccaagatactcaatcttacacctgcagacaatggt |
300 |
Q |
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|||| ||||||| || |||||||||||||| || |||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
26560480 |
catctctttatcgattcccagaatcatgggttttggaggcagccaccaagatactcaatcttacaccaacagataatggt |
26560401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 57 - 301
Target Start/End: Original strand, 26562943 - 26563187
Alignment:
| Q |
57 |
aagatcaggtgcagcacttgtagcaccttattctgcatccaaatgggcaattgaaggactcactaagtctgttgctgaagagttgccgaaaggaatggca |
156 |
Q |
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| T |
26562943 |
aagatcaggtgctgcactcgtagcaccttactttgcatccaaatgggaaattgaaggactcaccaagtctgttgctgaagagtttcctaaaggaatggca |
26563042 |
T |
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| Q |
157 |
gtagtggcactcaatccaggagtcatcaacactgacatgcttgcttcatgctatggtgcttcctcatcgctttatcaatccccagaatcatgggattcag |
256 |
Q |
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|| ||||||||||| |||||||||||| |||| |||| ||||| || ||||| |||||||||||||| || |||||||||||||||||||||| || | |
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| T |
26563043 |
gtgatggcactcaatacaggagtcatcagcactaacatacttgcgtcttgctacggtgcttcctcatctctctatcaatccccagaatcatgggttttgg |
26563142 |
T |
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| Q |
257 |
aggcagccaccaagatactcaatcttacacctgcagacaatggtg |
301 |
Q |
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||| ||||||||| ||||||||||||||||| || ||||||||| |
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| T |
26563143 |
aggaagccaccaaaatactcaatcttacacccacaaacaatggtg |
26563187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 31 - 249
Target Start/End: Original strand, 56436934 - 56437152
Alignment:
| Q |
31 |
atagtgaacatgtcttctggttggggaagatcaggtgcagcacttgtagcaccttattctgcatccaaatgggcaattgaaggactcactaagtctgttg |
130 |
Q |
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||||| ||| |||||||||||||||||||||| |||||||||||||| || ||||| | ||||||||||||||| |||||||||||||| |||||||| | |
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| T |
56436934 |
atagttaacttgtcttctggttggggaagatcgggtgcagcacttgttgctccttactgtgcatccaaatgggctattgaaggactcacaaagtctgtag |
56437033 |
T |
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| Q |
131 |
ctgaagagttgccgaaaggaatggcagtagtggcactcaatccaggagtcatcaacactgacatgcttgcttcatgctatggtgcttcctcatcgcttta |
230 |
Q |
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|| ||||||| || |||||||||| || || ||||||||||| || |||||||||||||||||||||||||| |||| |||||||||| | || ||||| |
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| T |
56437034 |
ctaaagagttaccacaaggaatggctgttgtcgcactcaatcctggtgtcatcaacactgacatgcttgcttcttgctttggtgcttccgcttctcttta |
56437133 |
T |
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| Q |
231 |
tcaatccccagaatcatgg |
249 |
Q |
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||||||||| ||||||||| |
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| T |
56437134 |
tcaatcccctgaatcatgg |
56437152 |
T |
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