View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9504_low_53 (Length: 289)
Name: NF9504_low_53
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9504_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 3819463 - 3819724
Alignment:
| Q |
1 |
ttggatcggtgatgtcgcattggatgtattccacagggtgatctgcgttccaagaaggtcgtggacggcgggcaacgccgtaaaccttccatctaccgcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3819463 |
ttggatcggtgatgtcgcattggatgtattccacagggtgatctgcgttccaagaaggtcgtggacggcgggcaacgccgtaaaccttccatctaccgcc |
3819562 |
T |
|
| Q |
101 |
tggtgtgtctgctaaaggtagaatttcggccaaactgttgccgacgatgccggttacgccaaccactaaagctacgttctggaagcttcttggtgcttcg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3819563 |
tggtgtgtctgctaaaggtagaatttcggccaaactgttgccgacgatgcccgttacgccaaccactaaagctacattctggaagcttcttggtgcttcg |
3819662 |
T |
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| Q |
201 |
tcttcatctagtttcttctgcaaagtaataataacagaaaatcattatcaataattgaaactaaa |
265 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3819663 |
tcttcatctagtttcttctgcaaag---taataacagaaaatcattatcaataattgaaactaaa |
3819724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 47338414 - 47338153
Alignment:
| Q |
1 |
ttggatcggtgatgtcgcattggatgtattccacagggtgatctgcgttccaagaaggtcgtggacggcgggcaacgccgtaaaccttccatctaccgcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
47338414 |
ttggatcggtgatgtcgcattggatgtattccacaggatgatctgcgttccaggaaggtcgtgaacggcgggcaacgccgtaaaccttccatctaccgcc |
47338315 |
T |
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| Q |
101 |
tggtgtgtctgctaaaggtagaatttcggccaaactgttgccgacgatgccggttacgccaaccactaaagctacgttctggaagcttcttggtgcttcg |
200 |
Q |
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| T |
47338314 |
tggtgtgtctgctaaaggtagaatttcggccaaactgttgccgacgatgccggttacgccaaccactaaagctacgttctggaagcttcttggtgcttcg |
47338215 |
T |
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| Q |
201 |
tcttcatctagtttcttctgcaaagtaataataacagaaaatcattatcaataattgaaactaaa |
265 |
Q |
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|||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
47338214 |
tcttcatcgagtttcttctgcaaagta---ataaaagaaaatcattatcaataattgaaactaaa |
47338153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 47346884 - 47346663
Alignment:
| Q |
1 |
ttggatcggtgatgtcgcattggatgtattccacagggtgatctgcgttccaagaaggtcgtggacggcgggcaacgccgtaaaccttccatctaccgcc |
100 |
Q |
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||||||||||||||||||||||||||||||| | || ||||| |||||||| || |||||||| || || ||||||||||| || |||||||||||||| |
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| T |
47346884 |
ttggatcggtgatgtcgcattggatgtattcgattggatgatcggcgttccaggagggtcgtggccgccgtgcaacgccgtagactttccatctaccgcc |
47346785 |
T |
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| Q |
101 |
tggtgtgtctgctaaaggtagaatttcggccaaactgttgccgacgatgccggttacgccaaccactaaagctacgttctggaagcttcttggtgcttcg |
200 |
Q |
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|||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||| || | | || ||||| |||||||| || ||||||||| |
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| T |
47346784 |
tggtgtgtctgctagaggtagaatttcggcgaggctgtttccgacgatgccggttactccgatgattagtcctacgctctggaaggttggcggtgcttcg |
47346685 |
T |
|
| Q |
201 |
tcttcatctagtttcttctgca |
222 |
Q |
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|||||||| | ||||||||||| |
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| T |
47346684 |
tcttcatcaaatttcttctgca |
47346663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 222
Target Start/End: Complemental strand, 47349388 - 47349202
Alignment:
| Q |
36 |
gggtgatctgcgttccaagaaggtcgtggacggcgggcaacgccgtaaaccttccatctaccgcctggtgtgtctgctaaaggtagaatttcggccaaac |
135 |
Q |
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|||||||| |||||||| || || ||||| | || |||||||| || |||||||| | ||| |||||||||||||||| ||||||||||||||||| || |
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| T |
47349388 |
gggtgatcggcgttccaggagggccgtggcctccgtgcaacgccatagaccttccaccgaccacctggtgtgtctgctagaggtagaatttcggccagac |
47349289 |
T |
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| Q |
136 |
tgttgccgacgatgccggttacgccaaccactaaagctacgttctggaagcttcttggtgcttcgtcttcatctagtttcttctgca |
222 |
Q |
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||||||| || ||||| || ||||| || || || || || |||||||||||| |||||||| |||||||| | ||||||||||| |
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| T |
47349288 |
tgttgccaacaatgccagtcacgccgactaccaacgccacattctggaagctttgcggtgcttcatcttcatccaatttcttctgca |
47349202 |
T |
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