View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9504_low_55 (Length: 287)

Name: NF9504_low_55
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9504_low_55
NF9504_low_55
[»] chr6 (2 HSPs)
chr6 (20-269)||(14809252-14809501)
chr6 (239-272)||(14809601-14809634)
[»] chr4 (2 HSPs)
chr4 (119-225)||(27731653-27731758)
chr4 (119-225)||(27738688-27738793)
[»] chr3 (3 HSPs)
chr3 (119-223)||(21249795-21249898)
chr3 (239-276)||(27237998-27238035)
chr3 (236-276)||(24700104-24700144)
[»] scaffold0234 (1 HSPs)
scaffold0234 (236-276)||(6976-7016)
[»] chr8 (1 HSPs)
chr8 (236-276)||(19177960-19178000)
[»] chr5 (1 HSPs)
chr5 (236-276)||(17042205-17042245)
[»] chr2 (1 HSPs)
chr2 (236-276)||(36250608-36250648)


Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 14809501 - 14809252
Alignment:
Q  20 agcaagtcattgattggatgtgtgagccaatataccaaacacaaatgaaagaggaactcattcaactcattcaattatagaaaaagtaattaaacaaaat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14809501 agcaagtcattgattggatgtgtgagccaatataccaaacacaaatgaaagaggaactcattcaactcattcaattatagaaaaagtaattaaacaaaat 14809402  T
Q  120 atattcctctattgagtttacatttgtgtaaacattcagaatatcgatggaaaaaaccaatcatttcctttccatagaacaatgacttcaaatcacctag 219  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14809401 atattcctttattgagtttacatttgtgtacacattcagaatatcgatggaaaaaaccaatcatttcctttccatagaacaatgacttcaaatcacctag 14809302  T
Q  220 ataagaatcatctatagtgaaaagtcaatttcaaccgatgtaaaatgtca 269  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  14809301 ataagaatcatctgtagtgaaaagtcaatttcaaccgatgtgaaatgtca 14809252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 272
Target Start/End: Original strand, 14809601 - 14809634
Alignment:
Q  239 aaaagtcaatttcaaccgatgtaaaatgtcattt 272  Q
    ||||||||||||||||||||||||||||||||||    
T  14809601 aaaagtcaatttcaaccgatgtaaaatgtcattt 14809634  T

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Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 119 - 225
Target Start/End: Original strand, 27731653 - 27731758
Alignment:
Q  119 tatattcctctattgagtttacatttgtgtaaacattcagaatatcgatggaaaaaaccaatcatttcctttccatagaacaatgacttcaaatcaccta 218  Q
    |||| |||||| |||||||||||| |||| | |||||||||||||| |||| |||||| |||||||| |||| ||||||||||||| || |||| |||||    
T  27731653 tatactcctctgttgagtttacatctgtgaacacattcagaatatcaatgg-aaaaacaaatcattttctttgcatagaacaatgagttaaaatgaccta 27731751  T
Q  219 gataaga 225  Q
     ||||||    
T  27731752 aataaga 27731758  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 119 - 225
Target Start/End: Original strand, 27738688 - 27738793
Alignment:
Q  119 tatattcctctattgagtttacatttgtgtaaacattcagaatatcgatggaaaaaaccaatcatttcctttccatagaacaatgacttcaaatcaccta 218  Q
    |||| ||||||||||||||| ||| |||| | |||||||||||||| |||| |||||| ||||||| | ||| ||||||||||||| ||||||| |||||    
T  27738688 tatactcctctattgagtttccatctgtgaacacattcagaatatcaatgg-aaaaacaaatcattacatttgcatagaacaatgagttcaaatgaccta 27738786  T
Q  219 gataaga 225  Q
     ||||||    
T  27738787 aataaga 27738793  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 223
Target Start/End: Complemental strand, 21249898 - 21249795
Alignment:
Q  119 tatattcctctattgagtttacatttgtgtaaacattcagaatatcgatggaaaaaaccaatcatttcctttccatagaacaatgacttcaaatcaccta 218  Q
    |||| ||||||||| |||||||||||||| | |||||||| ||||| |||| |||||| ||||||||||||| || |||||||| | ||||||| |||||    
T  21249898 tatactcctctattaagtttacatttgtgaacacattcaggatatcaatgg-aaaaacaaatcatttcctttacaaagaacaattagttcaaatgaccta 21249800  T
Q  219 gataa 223  Q
     ||||    
T  21249799 aataa 21249795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 27237998 - 27238035
Alignment:
Q  239 aaaagtcaatttcaaccgatgtaaaatgtcatttctgt 276  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  27237998 aaaagtcgatttcaaccgatgtaagatgtcatttctgt 27238035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 24700144 - 24700104
Alignment:
Q  236 gtgaaaagtcaatttcaaccgatgtaaaatgtcatttctgt 276  Q
    |||||| ||| |||||||||||||| |||||||||||||||    
T  24700144 gtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgt 24700104  T

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Target: scaffold0234 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 6976 - 7016
Alignment:
Q  236 gtgaaaagtcaatttcaaccgatgtaaaatgtcatttctgt 276  Q
    |||||| ||||||||||| |||||| |||||||||||||||    
T  6976 gtgaaatgtcaatttcaatcgatgtgaaatgtcatttctgt 7016  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 19178000 - 19177960
Alignment:
Q  236 gtgaaaagtcaatttcaaccgatgtaaaatgtcatttctgt 276  Q
    |||||| ||| |||||||||||||| |||||||||||||||    
T  19178000 gtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgt 19177960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 17042245 - 17042205
Alignment:
Q  236 gtgaaaagtcaatttcaaccgatgtaaaatgtcatttctgt 276  Q
    |||||| ||| |||||||||||||| |||||||||||||||    
T  17042245 gtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgt 17042205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 36250608 - 36250648
Alignment:
Q  236 gtgaaaagtcaatttcaaccgatgtaaaatgtcatttctgt 276  Q
    |||||| ||| |||||||||||||| |||||||||||||||    
T  36250608 gtgaaatgtcgatttcaaccgatgtgaaatgtcatttctgt 36250648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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