View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9504_low_60 (Length: 279)

Name: NF9504_low_60
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9504_low_60
NF9504_low_60
[»] chr7 (3 HSPs)
chr7 (9-214)||(3597877-3598082)
chr7 (159-211)||(27962549-27962602)
chr7 (230-266)||(27962625-27962661)
[»] chr3 (3 HSPs)
chr3 (2-151)||(2251888-2252037)
chr3 (2-155)||(2252444-2252597)
chr3 (61-196)||(49233862-49233997)
[»] chr2 (1 HSPs)
chr2 (57-196)||(24455801-24455940)
[»] chr5 (1 HSPs)
chr5 (230-276)||(4356953-4357001)
[»] chr8 (4 HSPs)
chr8 (159-211)||(14839088-14839141)
chr8 (150-201)||(43228032-43228083)
chr8 (230-276)||(43227952-43227998)
chr8 (230-266)||(14839029-14839065)
[»] chr1 (3 HSPs)
chr1 (103-196)||(50862480-50862573)
chr1 (160-211)||(25433519-25433571)
chr1 (230-266)||(25433750-25433786)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 3597877 - 3598082
Alignment:
Q  9 cttttaaatactttatgcgtagagggtgtcaaggggcggaagaaacaactgcagtaccgaaacacctctgttgcacaatatcagtccacaaactgaaaac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3597877 cttttaaatactttatgcgtagagggtgtcaaggggcggaagaaacaactgcagtaccgaaacacctctgttgcacaatatcagtccaccaactgaaaac 3597976  T
Q  109 cagctctgaattatgcagaaaaccaccaggaatttgctctgaattattcagaaaattaccttaaaccagctccaaatagttaagcacaaacattgaatat 208  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||    
T  3597977 cagctctgaattatgcagaaaaccaccaggaacttgctctgaattattcagaaaattacttcaaaccagctccaaatagttaagcaaaaacattgaatat 3598076  T
Q  209 gaatat 214  Q
    ||||||    
T  3598077 gaatat 3598082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 27962549 - 27962602
Alignment:
Q  159 gaaaattaccttaaaccagctccaaatagttaagcacaaacat-tgaatatgaa 211  Q
    |||||||||||| |||||||||  ||||||||||||||||||| ||||||||||    
T  27962549 gaaaattaccttgaaccagctctgaatagttaagcacaaacatctgaatatgaa 27962602  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 27962625 - 27962661
Alignment:
Q  230 aagcatatattttggagttatggtaacaaaggctaat 266  Q
    |||||||||||||||||||||| |||| |||||||||    
T  27962625 aagcatatattttggagttatgctaactaaggctaat 27962661  T

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Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 2 - 151
Target Start/End: Complemental strand, 2252037 - 2251888
Alignment:
Q  2 attgctacttttaaatactttatgcgtagagggtgtcaaggggcggaagaaacaactgcagtaccgaaacacctctgttgcacaatatcagtccacaaac 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2252037 attgctacttttaaatactttatgcgtagagggtgtcaaggggcggaagaaacaactgcagtaccgaaacacctctgttgcacaatatcagtccacaaac 2251938  T
Q  102 tgaaaaccagctctgaattatgcagaaaaccaccaggaatttgctctgaa 151  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  2251937 tgaaaaccagctctgaattatgcagaaaaccgctaggaatttgctctgaa 2251888  T

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Target: chr3; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 2 - 155
Target Start/End: Complemental strand, 2252597 - 2252444
Alignment:
Q  2 attgctacttttaaatactttatgcgtagagggtgtcaaggggcggaagaaacaactgcagtaccgaaacacctctgttgcacaatatcagtccacaaac 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    ||||||||||    
T  2252597 attgctacttttaaatactttatgcgtagagggtgtcaaggggcggaagaaacaactgcagtaccgaaacacctatgttgcacaattgatgtccacaaac 2252498  T
Q  102 tgaaaaccagctctgaattatgcagaaaaccaccaggaatttgctctgaattat 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2252497 tgaaaaccagctctgaattatgcagaaaaccaccaggaatttgctctgaattat 2252444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 61 - 196
Target Start/End: Original strand, 49233862 - 49233997
Alignment:
Q  61 agtaccgaaacacctctgttgcacaatatcagtccacaaactgaaaaccagctctgaattatgcagaaaaccaccaggaatttgctctgaattattcaga 160  Q
    |||||| ||||||  ||| ||||| | || ||||||||  | ||||||||||||| |||||||||||||| ||||  ||  | ||||  |||||| ||||    
T  49233862 agtaccaaaacactgctgctgcactacattagtccacatgccgaaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcaga 49233961  T
Q  161 aaattaccttaaaccagctccaaatagttaagcaca 196  Q
    |||||||||| |||||||||  ||||||||||||||    
T  49233962 aaattaccttgaaccagctctgaatagttaagcaca 49233997  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 196
Target Start/End: Complemental strand, 24455940 - 24455801
Alignment:
Q  57 ctgcagtaccgaaacacctctgttgcacaatatcagtccacaaactgaaaaccagctctgaattatgcagaaaaccaccaggaatttgctctgaattatt 156  Q
    ||||| |||| ||||||  ||||||||  | || ||||||||  | ||||||||||||| |||||||||||||| ||||  ||  | ||||  ||||||     
T  24455940 ctgcaataccaaaacactgctgttgcattacattagtccacatgccgaaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatg 24455841  T
Q  157 cagaaaattaccttaaaccagctccaaatagttaagcaca 196  Q
    |||||||||||||| |||||||||  ||||||||||||||    
T  24455840 cagaaaattaccttgaaccagctctgaatagttaagcaca 24455801  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 4357001 - 4356953
Alignment:
Q  230 aagcatatattttggagt--tatggtaacaaaggctaatacattattca 276  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||    
T  4357001 aagcatatattttggagtgttatggtaacaaaggctaatacattattca 4356953  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 14839141 - 14839088
Alignment:
Q  159 gaaaattaccttaaaccagctccaaatagttaagcacaaacat-tgaatatgaa 211  Q
    |||||||||||| |||||||||  ||||||||||||||||||| ||||||||||    
T  14839141 gaaaattaccttgaaccagctctgaatagttaagcacaaacatctgaatatgaa 14839088  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 43228083 - 43228032
Alignment:
Q  150 aattattcagaaaattaccttaaaccagctccaaatagttaagcacaaacat 201  Q
    |||||| |||||||||||||| ||||| |||  |||||||||||||||||||    
T  43228083 aattatgcagaaaattaccttgaaccaactctgaatagttaagcacaaacat 43228032  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 43227998 - 43227952
Alignment:
Q  230 aagcatatattttggagttatggtaacaaaggctaatacattattca 276  Q
    |||||||||||||||||||||| |||| ||||||||| ||| |||||    
T  43227998 aagcatatattttggagttatgctaaccaaggctaatgcataattca 43227952  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 14839065 - 14839029
Alignment:
Q  230 aagcatatattttggagttatggtaacaaaggctaat 266  Q
    |||||||||||||||||||||| |||| |||||||||    
T  14839065 aagcatatattttggagttatgctaactaaggctaat 14839029  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 50862573 - 50862480
Alignment:
Q  103 gaaaaccagctctgaattatgcagaaaaccaccaggaatttgctctgaattattcagaaaattaccttaaaccagctccaaatagttaagcaca 196  Q
    ||||| ||||||| |||||||||||||| ||||  ||  | ||||  |||||| ||||||| |||||| |||||||||  ||||| ||||||||    
T  50862573 gaaaatcagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaactaccttgaaccagctctgaatagataagcaca 50862480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 25433571 - 25433519
Alignment:
Q  160 aaaattaccttaaaccagctccaaatagttaagcacaaacat-tgaatatgaa 211  Q
    ||||||||||| ||||| |||| ||||||||||| ||||||| ||||||||||    
T  25433571 aaaattaccttgaaccaactccgaatagttaagcgcaaacatctgaatatgaa 25433519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 25433786 - 25433750
Alignment:
Q  230 aagcatatattttggagttatggtaacaaaggctaat 266  Q
    |||||||||||||||||||||| |||| |||||||||    
T  25433786 aagcatatattttggagttatgttaactaaggctaat 25433750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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