View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9504_low_65 (Length: 254)
Name: NF9504_low_65
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9504_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 4547484 - 4547724
Alignment:
| Q |
1 |
atagtgtgttattagcttttacttgggactaaaatcatacaatttagattttagagacaaaaaattataatttttggaaagnnnnnnnnnn--ccaattt |
98 |
Q |
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| T |
4547484 |
atagtgtgttattagcttttacttgggactaaaatcatacaatttagattttagagacaaaaaattataatttttggaaaaaaaaaaaaaaaaccaattt |
4547583 |
T |
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| Q |
99 |
taaagaaatcaatattatagttaaccctgttaannnnnnnnaagaaatttaaccctattaattagtaactaggccaattaaatgataactaatacaaaag |
198 |
Q |
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| T |
4547584 |
taaagaaatcaatattatagttaaccctgttaattttttttaagaaatttaaccctattaattagtaactaggccaattaaatgataactaatacgaaag |
4547683 |
T |
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| Q |
199 |
gagaaaaacttacatatataagaagactttgaccatgttct |
239 |
Q |
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| T |
4547684 |
gagaaaaacttacatatataagaagactttgaccatgttct |
4547724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3080991 - 3080927
Alignment:
| Q |
1 |
atagtgtgttattagcttttacttgggactaaaatcatacaatttagattttagagacaaaaaat |
65 |
Q |
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|||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || |||||| |
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| T |
3080991 |
atagtgtgtttttagcttttacttgggattaaaatcacacaatttagattttagacactaaaaat |
3080927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3095428 - 3095364
Alignment:
| Q |
1 |
atagtgtgttattagcttttacttgggactaaaatcatacaatttagattttagagacaaaaaat |
65 |
Q |
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|||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || |||||| |
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| T |
3095428 |
atagtgtgtttttagcttttacttgggattaaaatcacacaatttagattttagacactaaaaat |
3095364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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