View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9504_low_66 (Length: 250)
Name: NF9504_low_66
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9504_low_66 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 29217994 - 29217761
Alignment:
| Q |
1 |
atgcataataaattatgggtagttataattaacttttgattttgcacttcagaatgaccaagtttcaatggaaaatatcagttcttttcgacaaatattt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29217994 |
atgcataataaattatgggtagttttaattaacttttgattttgcacttcagaatgaccaagtttcaatggaaaatatcagttcttttcgacaaatattt |
29217895 |
T |
|
| Q |
101 |
attatgtgacactaatgaaactcaatttctattagttttggttcttaatagctaactaaacagttgnnnnnnnncatataatattgaaagttctaattat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
29217894 |
attatgtgacactaatgaaactcaatttctattagttttggttcttaatagctaactaaacagttg--ttttttcatataata-tgaaagttctaattat |
29217798 |
T |
|
| Q |
201 |
gctcacttgaaattattgtcctcttcacttaccatct |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29217797 |
gctcacttgaaattattgtcctcttcacttaccatct |
29217761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University