View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9504_low_68 (Length: 246)
Name: NF9504_low_68
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9504_low_68 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 246
Target Start/End: Complemental strand, 37975240 - 37975008
Alignment:
| Q |
14 |
gtgctccaaaagggttcatctcttgtgaaccaccgttctcttcaaaagcagcacgtaacctaccaataagagcatcaagacttccccaggcttgtttcaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37975240 |
gtgctccaaaagggttcatctcttgtgaaccaccgttctcttcaaaagcagcacgtaacctaccaataagagcatcaagacttccccaagcttgtttcaa |
37975141 |
T |
|
| Q |
114 |
aggacaaggacatggacctggtgggtgtgagtttccaaaataagcacagttttcagaatgaaccttggtttttccaaactgatccaagtaacgaagaaac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37975140 |
aggacaaggacatggacctggtgggtgtgagtttccaaaataagcacagttttcagaatgaaccttggtttttccaaactgatccaagtaacgaagaaac |
37975041 |
T |
|
| Q |
214 |
tcaagaacatgtgcaccactacaacgtgagagt |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
37975040 |
tcaagaacatgtgcaccactacaacgtgagagt |
37975008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 137
Target Start/End: Original strand, 32002114 - 32002208
Alignment:
| Q |
43 |
ccaccgttctcttcaaaagcagcacgtaacctaccaataagagcatcaagacttccccaggcttgtttcaaaggacaaggacatggacctggtgg |
137 |
Q |
| |
|
||||| || |||||| ||||||| | ||| || ||||| || ||||||||||||||||| |||||||| | |||||||| |||||| || ||||| |
|
|
| T |
32002114 |
ccaccattttcttcataagcagctcttaatcttccaattagtgcatcaagacttccccaagcttgttttagaggacaagtacatggtccaggtgg |
32002208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 39556640 - 39556578
Alignment:
| Q |
46 |
ccgttctcttcaaaagcagcacgtaacctaccaataagagcatcaagacttccccaggcttgt |
108 |
Q |
| |
|
||||| || ||| ||||||| | |||||| ||||| |||||||||||||||||||| |||||| |
|
|
| T |
39556640 |
ccgttttcctcataagcagcccttaacctcccaattagagcatcaagacttccccaagcttgt |
39556578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 4863169 - 4863117
Alignment:
| Q |
172 |
tgaaccttggtttttccaaactgatccaagtaacgaagaaactcaagaacatg |
224 |
Q |
| |
|
|||||||| || |||||||| ||||| ||||||||||| |||||||| ||||| |
|
|
| T |
4863169 |
tgaaccttagtctttccaaattgatctaagtaacgaaggaactcaagcacatg |
4863117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 33672173 - 33672250
Alignment:
| Q |
169 |
gaatgaaccttggtttttccaaactgatccaagtaacgaagaaactcaagaacatgtgcaccactacaacgtgagagt |
246 |
Q |
| |
|
||||||||||| ||||| ||||||||||| | || | | ||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
33672173 |
gaatgaaccttagttttcccaaactgatcaagataccttaaaaattcaagaacatgtgctccactacaacgtgagagt |
33672250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University