View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9504_low_71 (Length: 239)
Name: NF9504_low_71
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9504_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 29218123 - 29218345
Alignment:
| Q |
1 |
ccctcaccatgtctctcttgcattccacatgacacaataaactaaaactaaacaacactgatttagcaaggtaaataatgattctccgaaaccttcaaaa |
100 |
Q |
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| T |
29218123 |
ccctcaccatgtctctcttgcattccacatgacacattaaactaaaactaaacaacactgatttagcaaggtaaataatgattctccaaaaccttcaaaa |
29218222 |
T |
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| Q |
101 |
cccggacatgggggttgttttccaacacttcaaccgaaagagataacttcatactttagaaacaaagtgcaagacaaataatgtacgacaaagaataaac |
200 |
Q |
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| T |
29218223 |
cccgggcatgggggttgttttccaacacttcaaccgaaagagataacttcatactttagaaacaaagtgcaagacaaataatgtacgacaaagaataaac |
29218322 |
T |
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| Q |
201 |
cgtcaatttagtcttgaaagcat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
29218323 |
cgtcaatttagtcttgaaagcat |
29218345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 21331776 - 21331948
Alignment:
| Q |
18 |
ttgcattccacatgacacaataaactaaaactaaacaacactgatttagcaaggtaaataatgattctccgaaaccttcaaaacccggacatgggggttg |
117 |
Q |
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|||||||||| |||| |||||||||||| |||| |||||||||| ||||||||||||||||||||| | | |||||||||| ||||| | ||||||| |
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| T |
21331776 |
ttgcattccagatgatacaataaactaaccctaagcaacactgatctagcaaggtaaataatgattccctggaaccttcaaagcccggtcccaggggttg |
21331875 |
T |
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| Q |
118 |
ttttccaacacttcaaccgaaagagataacttcatactttagaaacaaagtgcaagacaaataatgtacgaca |
190 |
Q |
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| T |
21331876 |
ttttccaacactttcatcggaagaaataacttcataatttagaaacgaagtgtaagacaaagaatgtaagaca |
21331948 |
T |
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