View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9505_high_1 (Length: 632)
Name: NF9505_high_1
Description: NF9505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9505_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 482; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 17 - 621
Target Start/End: Original strand, 4134267 - 4134868
Alignment:
| Q |
17 |
aattataagttataaaagtggttccatcatcgtcgacacctaaacgccaaccaaatagatattcggttgacattcttggcgttccaagaaaaacccttcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
4134267 |
aattataagttataaaagtggttccatcatcgtcgacacctaaacgccaaccaaatagatattcggttgacaatcttggcgttccgagaaaaacccttcc |
4134366 |
T |
|
| Q |
117 |
attccatggaccagttctccaataaannnnnnnatctttccaaatgaaaacttctggtacatcctccaatctttcaacactaattgtaaaatgtcctgaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
4134367 |
attccatggaccagttctccaataaatttttttatctttccaaatgaaaacttctggtacatcc---aatctttcaacactaattgtaaaatgtcccgaa |
4134463 |
T |
|
| Q |
217 |
gaaggatcattgtcactttttcttgatacaaatgcaatttgcttacctgtaactttgttagatgcaatcttcatcgatggaacagctgcatccgcagggt |
316 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||| |
|
|
| T |
4134464 |
gaaggatcattgtcactttttcttgctacaaaagcaatttgcttacctgtaactttattagatgcaattttcatcgatggaacagctgaatctgcagggt |
4134563 |
T |
|
| Q |
317 |
gtgtgaaactatcccagattgttgctccagaattgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagttgaaat |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| | ||||||||| |||| |||| |||||| |||||||||||||||||||| |||||| |
|
|
| T |
4134564 |
gtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaat |
4134663 |
T |
|
| Q |
417 |
gtttgttgaccaaatgatgctgccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaattccatttgaatctttgagtggttga |
516 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4134664 |
gtttgttgaccaaatgatgataccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaattccatttgaatctttgagtggttga |
4134763 |
T |
|
| Q |
517 |
tctctgtttgcaatccatatgttgttggtttcattgatgtaccaaattcctaagtaacggttggttgaatttaatgggctgaaaaatcctagcttgaggt |
616 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
4134764 |
tctctgtttgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgttcgaatttaatgggctgaaaaatcctagcttgaggt |
4134863 |
T |
|
| Q |
617 |
ctgtg |
621 |
Q |
| |
|
||||| |
|
|
| T |
4134864 |
ctgtg |
4134868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 17 - 621
Target Start/End: Original strand, 4145069 - 4145670
Alignment:
| Q |
17 |
aattataagttataaaagtggttccatcatcgtcgacacctaaacgccaaccaaatagatattcggttgacattcttggcgttccaagaaaaacccttcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||| |
|
|
| T |
4145069 |
aattataagttataaaagtggttccatcatcgtcgacacctaaacgccaaccaaatagatattcggttgacaatcttggcgttccgagaaaaactcttcc |
4145168 |
T |
|
| Q |
117 |
attccatggaccagttctccaataaannnnnnnatctttccaaatgaaaacttctggtacatcctccaatctttcaacactaattgtaaaatgtcctgaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
4145169 |
attccatggaccagttctccaataaatttttttatctttccaaatgaaaacttctggtacatcc---aatctttcaacactaattgtaaaatgtcccgaa |
4145265 |
T |
|
| Q |
217 |
gaaggatcattgtcactttttcttgatacaaatgcaatttgcttacctgtaactttgttagatgcaatcttcatcgatggaacagctgcatccgcagggt |
316 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | ||||| |
|
|
| T |
4145266 |
gaaggatcattgtcactttttcttgctacaaaagcaatttgcttacctgtaactttgttagatgcaattttcatcgatggaacagctgaatctgaagggt |
4145365 |
T |
|
| Q |
317 |
gtgtgaaactatcccagattgttgctccagaattgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagttgaaat |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| | ||||||||| |||| |||| |||||| |||||||||||||||||||| |||||| |
|
|
| T |
4145366 |
gtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaat |
4145465 |
T |
|
| Q |
417 |
gtttgttgaccaaatgatgctgccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaattccatttgaatctttgagtggttga |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4145466 |
gtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtggttga |
4145565 |
T |
|
| Q |
517 |
tctctgtttgcaatccatatgttgttggtttcattgatgtaccaaattcctaagtaacggttggttgaatttaatgggctgaaaaatcctagcttgaggt |
616 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4145566 |
tctctgtttgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagcttgaggt |
4145665 |
T |
|
| Q |
617 |
ctgtg |
621 |
Q |
| |
|
||||| |
|
|
| T |
4145666 |
ctgtg |
4145670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 58 - 613
Target Start/End: Original strand, 4153113 - 4153665
Alignment:
| Q |
58 |
aaacgccaaccaaatagatattcggttgacattcttggcgttccaagaaaaacccttccattccatggaccagttctccaataaannnnnnnatctttcc |
157 |
Q |
| |
|
||||||||||| || ||| |||||| ||||||| || | ||| |||||||||||||||||||||||||| |||||||||| || |||||||| |
|
|
| T |
4153113 |
aaacgccaaccggctaaatactcggttaacattctcggtgatccgagaaaaacccttccattccatggacctgttctccaatgaatatttttatctttcc |
4153212 |
T |
|
| Q |
158 |
aaatgaaaacttctggtacatcctccaatctttcaacactaattgtaaaatgtcctgaagaaggatcattgtcactttttcttgatacaaatgcaatttg |
257 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||| |||| || | |||||||||||||||||||||| |||||||||||||||||||| | |||| |
|
|
| T |
4153213 |
aaatgaaaacttctggtgcatcc---aatctttcaagactagctgaataatgtcctgaagaaggatcattatcactttttcttgatacaaaggatatttt |
4153309 |
T |
|
| Q |
258 |
cttacctgtaactttgttagatgcaatcttcatcgatggaacagctgcatccgcagggtgtgtgaaactatcccagattgttgctccagaattgatatct |
357 |
Q |
| |
|
||||||||| |||| ||||| |||||| |||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
4153310 |
cttacctgttacttggttagctgcaattctcattgttggaacagctgcatctgcagggtgtgtgaaactatcccagattgttgctccggaactgatatct |
4153409 |
T |
|
| Q |
358 |
ctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagttgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaata |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || || ||||||||||||||||||| |
|
|
| T |
4153410 |
ctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaata |
4153509 |
T |
|
| Q |
458 |
ttacaagatttccatctttgtgaattgtgacaattccatttgaatctttgagtggttgatctctgtttgcaatccatatgttgttggtttcattgatgta |
557 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||| |
|
|
| T |
4153510 |
ttataaaatttccatctttgtgaattgtgacaattccatttgaatctttgagtggttgatctctgtttgcaatccatatattgttggtcttattgatgta |
4153609 |
T |
|
| Q |
558 |
ccaaattcctaagtaacggttggttgaatttaatgggctgaaaaatcctagcttga |
613 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4153610 |
ccaaattcctaggtaacggttggttgaatttaatgggctgaaaaatcctagcttga |
4153665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 97 - 613
Target Start/End: Original strand, 4123802 - 4124315
Alignment:
| Q |
97 |
gttccaagaaaaacccttccattccatggaccagttctccaataaannnnnnnatctttccaaatgaaaacttctggtacatcctccaatctttcaacac |
196 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||| || ||| | ||||||||||||||||||| ||||| |||||||||| || |
|
|
| T |
4123802 |
gttccgagaaaaaccaatccattccatggaccagttctccaatgaattttcttatcataccaaatgaaaacttctggtgcatcc---aatctttcaagac |
4123898 |
T |
|
| Q |
197 |
taattgtaaaatgtcctgaagaaggatcattgtcactttttcttgatacaaatgcaatttgcttacctgtaactttgttagatgcaatcttcatcgatgg |
296 |
Q |
| |
|
|| || | |||||||||||||||||||||| |||||||||||||||||||| | |||| ||||||||| |||| ||||| |||||| |||| | ||| |
|
|
| T |
4123899 |
tagctgaataatgtcctgaagaaggatcattatcactttttcttgatacaaaggatattttcttacctgttacttggttagctgcaattctcattgttgg |
4123998 |
T |
|
| Q |
297 |
aacagctgcatccgcagggtgtgtgaaactatcccagattgttgctccagaattgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgtt |
396 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4123999 |
aacagctgcatctgcagggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgtt |
4124098 |
T |
|
| Q |
397 |
gaatttgttgaagttgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaattccat |
496 |
Q |
| |
|
||||||||||||| |||||||||||||||||| || || |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
4124099 |
gaatttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatttttgtgaattgtgactattccat |
4124198 |
T |
|
| Q |
497 |
ttgaatctttgagtggttgatctctgtttgcaatccatatgttgttggtttcattgatgtaccaaattcctaagtaacggttggttgaatttaatgggct |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4124199 |
ttgaatctttgagtggttgatctctgtttgcaatccatatattgttggtctcattgatgtaccaaattcctaggtaacggttggttgaatttaatgggct |
4124298 |
T |
|
| Q |
597 |
gaaaaatcctagcttga |
613 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4124299 |
gaaaaatcctagcttga |
4124315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 58 - 613
Target Start/End: Original strand, 4163466 - 4164024
Alignment:
| Q |
58 |
aaacgccaaccaaatagatattcggttgacattcttggcgttccaagaaaaacccttccattccatggaccagttctccaataaannnnnnnatctttcc |
157 |
Q |
| |
|
||||||||||| || ||| |||||| ||||||| || | ||| ||||||||| ||||||||||||||||||||||||||| || ||| | || |
|
|
| T |
4163466 |
aaacgccaaccggctaaatactcggttaacattctcggtgatccgagaaaaaccgttccattccatggaccagttctccaatgaattctcttatcatacc |
4163565 |
T |
|
| Q |
158 |
aaatgaaaacttctggtacatcctccaatctttcaacactaattgtaaaatgtcctgaagaaggatcattgtcactttttcttgatacaaatgcaatttg |
257 |
Q |
| |
|
|||| |||||||||||| ||||| |||||||||| ||| | || |||||||||||||||||||||| |||||||||||||||||||| | || | |
|
|
| T |
4163566 |
aaataaaaacttctggtgcatcc---aatctttcaagacttcctatataatgtcctgaagaaggatcattttcactttttcttgatacaaaagatatatt |
4163662 |
T |
|
| Q |
258 |
cttacctgtaactttgttagatgcaatcttcatcgatggaacagctgcatccgcagggtgtgtgaaactatcccagattgttgctccagaattgatatct |
357 |
Q |
| |
|
||| || || |||| ||||||||||| |||||| ||||||||| |||||||||||||| |||||||||||||| ||||||| || ||||||||| || |
|
|
| T |
4163663 |
cttccccgttgctttattagatgcaattctcatcgttggaacagcggcatccgcagggtgagtgaaactatcccaaattgttgatctagaattgatgtca |
4163762 |
T |
|
| Q |
358 |
ctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagttg------aaatgtttgttgaccaaatgatgctgccatttggtttgt |
451 |
Q |
| |
|
|| | ||||||||||||| |||| ||||||||||||| |||||| ||||| ||| ||||| ||||||||||||||||||| |||||| ||||| |
|
|
| T |
4163763 |
cttagaatcaagtttcctacatcaacaagttgagctgtggaatttattgaatttggacttgaaatgcttgttgaccaaatgatgctaccattttctttgt |
4163862 |
T |
|
| Q |
452 |
tcaatattacaagatttccatctttgtgaattgtgacaattccatttgaatctttgagtggttgatctctgtttgcaatccatatgttgttggtttcatt |
551 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
4163863 |
tcaatattacaagatttccatttttgtgaattgtgactattccatttgaatccttgagtggttgatctctgtttgcaatccatatattgttggtctcatt |
4163962 |
T |
|
| Q |
552 |
gatgtaccaaattcctaagtaacggttggttgaatttaatgggctgaaaaatcctagcttga |
613 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4163963 |
gatgtaccaaattcctaggtaacggttggttgaatttaatgggctgaaaaatcctagcttga |
4164024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University