View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9505_low_1 (Length: 684)

Name: NF9505_low_1
Description: NF9505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9505_low_1
NF9505_low_1
[»] chr8 (12 HSPs)
chr8 (414-668)||(9032743-9032997)
chr8 (183-344)||(39655604-39655768)
chr8 (183-348)||(17028403-17028569)
chr8 (183-348)||(17558839-17559005)
chr8 (183-251)||(1788900-1788968)
chr8 (184-345)||(31183750-31183907)
chr8 (183-347)||(21347160-21347316)
chr8 (187-251)||(21185322-21185386)
chr8 (183-251)||(38678733-38678800)
chr8 (214-251)||(38676893-38676930)
chr8 (216-251)||(17088771-17088806)
chr8 (129-181)||(1789016-1789069)
[»] chr1 (16 HSPs)
chr1 (183-342)||(12141561-12141721)
chr1 (183-344)||(4242476-4242638)
chr1 (183-342)||(24981072-24981231)
chr1 (213-346)||(51465563-51465695)
chr1 (183-251)||(9111542-9111610)
chr1 (190-326)||(47580452-47580588)
chr1 (183-250)||(43254164-43254230)
chr1 (268-342)||(1953802-1953876)
chr1 (183-237)||(38825492-38825546)
chr1 (129-181)||(24981279-24981331)
chr1 (291-347)||(26310464-26310520)
chr1 (183-227)||(1953736-1953780)
chr1 (183-250)||(38828689-38828756)
chr1 (183-250)||(49387608-49387674)
chr1 (129-181)||(1953636-1953688)
chr1 (129-181)||(47580343-47580395)
[»] chr4 (9 HSPs)
chr4 (183-342)||(44643501-44643660)
chr4 (183-251)||(895491-895559)
chr4 (183-251)||(6667720-6667788)
chr4 (183-251)||(13010534-13010602)
chr4 (183-267)||(20058087-20058172)
chr4 (60-181)||(13010649-13010770)
chr4 (183-251)||(6671392-6671454)
chr4 (183-250)||(31767450-31767516)
chr4 (183-250)||(43287897-43287964)
[»] chr5 (6 HSPs)
chr5 (183-347)||(26702921-26703086)
chr5 (183-347)||(26972654-26972819)
chr5 (183-276)||(18594863-18594957)
chr5 (187-239)||(39292151-39292203)
chr5 (183-218)||(13292002-13292037)
chr5 (128-181)||(18594762-18594815)
[»] chr7 (11 HSPs)
chr7 (183-342)||(39426361-39426520)
chr7 (190-346)||(3850445-3850601)
chr7 (183-342)||(22301061-22301220)
chr7 (183-342)||(11674049-11674201)
chr7 (189-251)||(31210076-31210138)
chr7 (183-251)||(31206627-31206695)
chr7 (183-251)||(15569615-15569682)
chr7 (185-249)||(32352432-32352495)
chr7 (183-250)||(13815787-13815853)
chr7 (129-178)||(5434982-5435031)
chr7 (129-181)||(11673949-11674002)
[»] chr6 (13 HSPs)
chr6 (183-342)||(19697762-19697914)
chr6 (192-314)||(15518074-15518197)
chr6 (184-262)||(6591838-6591917)
chr6 (278-347)||(19976193-19976262)
chr6 (183-250)||(24044935-24045001)
chr6 (293-344)||(6591757-6591808)
chr6 (129-181)||(15517989-15518041)
chr6 (194-237)||(2936163-2936205)
chr6 (196-251)||(19973730-19973784)
chr6 (183-232)||(14579668-14579716)
chr6 (129-181)||(19697962-19698015)
chr6 (278-343)||(19973805-19973870)
chr6 (183-248)||(24041634-24041698)
[»] chr2 (10 HSPs)
chr2 (202-342)||(14433508-14433649)
chr2 (188-342)||(18739029-18739175)
chr2 (183-251)||(2590549-2590617)
chr2 (183-251)||(21189450-21189518)
chr2 (194-251)||(35969278-35969335)
chr2 (183-234)||(1043193-1043244)
chr2 (187-250)||(10941428-10941489)
chr2 (187-250)||(10947297-10947358)
chr2 (128-181)||(2590448-2590501)
chr2 (183-218)||(27083123-27083158)
[»] scaffold0014 (1 HSPs)
scaffold0014 (183-342)||(82670-82822)
[»] scaffold0028 (2 HSPs)
scaffold0028 (183-250)||(110169-110236)
scaffold0028 (183-251)||(127748-127816)
[»] chr3 (7 HSPs)
chr3 (251-342)||(11634076-11634167)
chr3 (187-250)||(19930038-19930100)
chr3 (183-250)||(42253564-42253630)
chr3 (183-237)||(9372227-9372280)
chr3 (189-250)||(19935237-19935297)
chr3 (183-227)||(11634195-11634239)
chr3 (183-237)||(2353245-2353298)
[»] scaffold0076 (1 HSPs)
scaffold0076 (183-253)||(6759-6829)


Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 414 - 668
Target Start/End: Original strand, 9032743 - 9032997
Alignment:
Q  414 gtgataattccacatctaattttacaatagagtatagagtatgtacaacatttcagtaacacatgatgtcccttcggacggcaacacatttttgatttcc 513  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  9032743 gtgataattccacatctaattttacaatagagcatagagtatgtacaacatttcagtaacacatgatgtcccttcggatggcaacacatttctgatttcc 9032842  T
Q  514 ctttcacaacattaccttattatgtaaccattgttactgatacatcaagacagatgaaaaatcaaggtaaagcacagaacatcaaataacattcagatga 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9032843 ctttcacaacattaccttattatgtaaccattgttactgatacatcaagacagatgaaaaatcaaggtaaagcacagaacatcaaataacattcagatga 9032942  T
Q  614 taaagggaaatatgtgacagacttgtatatgtaatagatttggaattgttgtaat 668  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9032943 taaagggaaatatgtgacagacttgtatatgtaatagatttggaattgttataat 9032997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 183 - 344
Target Start/End: Complemental strand, 39655768 - 39655604
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacagtgtgttgttttg--caagt 279  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||  || ||    
T  39655768 tatcatgggaggatatgcacttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggttacttaacagtgtgttgttttgcacaggt 39655669  T
Q  280 ttcctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttc 344  Q
    |||||| ||| |||||||||||||||||||||||| |||||| ||||  ||||||||||||||||    
T  39655668 ttcctccaatttgatttgtgaagattttgatggagctgtgtcggcaatcaaattcgataagtttc 39655604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 183 - 348
Target Start/End: Original strand, 17028403 - 17028569
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacagtgtgttgttttgcaagttt 281  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||| ||||| ||| ||| | |||||||||| ||||    
T  17028403 tatcctgggaggatatgcgctaatgaggcggataaaatcctcaaggacagtgactgtgtcacgcctcaggttacataatagtattttgttttgcaggttt 17028502  T
Q  282 cctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttcttga 348  Q
     | ||||| ||||||||||||||||||||||||| || | | |||||||||||||||||||||||||    
T  17028503 tccctaatttgatttgtgaagattttgatggagtcgtatgaacaactaaattcgataagtttcttga 17028569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 183 - 348
Target Start/End: Original strand, 17558839 - 17559005
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacagtgtgttgttttgcaagttt 281  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||| ||||| ||| ||| | |||||||||| ||||    
T  17558839 tatcctgggaggatatgcgctaatgaggcggataaaatcctcaaggacagtgactgtgtcacgcctcaggttacataatagtattttgttttgcaggttt 17558938  T
Q  282 cctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttcttga 348  Q
     | ||||| ||||||||||||||||||||||||| || | | |||||||||||||||||||||||||    
T  17558939 tccctaatttgatttgtgaagattttgatggagtcgtatgaacaactaaattcgataagtttcttga 17559005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 1788968 - 1788900
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1788968 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcag 1788900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 184 - 345
Target Start/End: Original strand, 31183750 - 31183907
Alignment:
Q  184 atcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacagtgtgttgttttgcaagtttc 282  Q
    ||||| |||||||||||||| |||||| ||||||||| |||||  ||||||| |||||| ||||||| |||||     ||||||||| |||||| |||||    
T  31183750 atccttggaggatatgcgctaatgaggtggataaaatactcaataacagtgattatgtcacgcctcatgttac-----agtgtgttgatttgcaggtttc 31183844  T
Q  283 ctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttct 345  Q
     |||||  |||||| ||||||||||||||||| ||||||  |||| |||||||||||||||||    
T  31183845 ttctaagttgatttatgaagattttgatggagctgtgtctacaaccaaattcgataagtttct 31183907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 183 - 347
Target Start/End: Original strand, 21347160 - 21347316
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagttt 281  Q
    |||| |||||||||||| |||||||||||||||||||||         ||||||||| || |||||||| |||||||||||| ||  |||||||| ||||    
T  21347160 tatcttgggaggatatgtgcttatgaggcggataaaatc---------agtgactatatcacgcctcaggttacttaacagtttgcagttttgcaggttt 21347250  T
Q  282 cctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttcttg 347  Q
    ||| |||| |||||||||||||||||||| ||| ||||||  |||| ||||| ||||| |||||||    
T  21347251 cctttaatttgatttgtgaagattttgatagagctgtgtcgacaaccaaatttgataaatttcttg 21347316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 21185386 - 21185322
Alignment:
Q  187 ctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  21185386 ctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcttcag 21185322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 38678733 - 38678800
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 251  Q
    |||||||  |||||||||||||||||| ||||| |||||||||| |||| |||||||||| ||||||||    
T  38678733 tatcctgtaaggatatgcgcttatgagacggatcaaatcctcaaagaca-tgactatgtcacgcctcag 38678800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 38676893 - 38676930
Alignment:
Q  214 ataaaatcctcaaggacagtgactatgtcgcgcctcag 251  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  38676893 ataaaatcctcaaggacagtgactatgtcacgcctcag 38676930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 17088806 - 17088771
Alignment:
Q  216 aaaatcctcaaggacagtgactatgtcgcgcctcag 251  Q
    ||||||||||||||||||||||||||| ||||||||    
T  17088806 aaaatcctcaaggacagtgactatgtcacgcctcag 17088771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 1789069 - 1789016
Alignment:
Q  129 aaaatattgag-tttctgcgttacatctcctgatatttttaagataaatttgag 181  Q
    ||||||||||| |||||| |||||||||| |||||| ||| |||||||||||||    
T  1789069 aaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgag 1789016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 2e-54; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 183 - 342
Target Start/End: Complemental strand, 12141721 - 12141561
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacagtgtgttgttttgcaagttt 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||| || ||||    
T  12141721 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggttacttaacggtgtgttgttttacatgttt 12141622  T
Q  282 cctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtt 342  Q
    | | |||| ||||||||||||||||||||| || |||||| ||||| ||||||||||||||    
T  12141621 cttttaatttgatttgtgaagattttgatgaagatgtgtcggcaaccaaattcgataagtt 12141561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 183 - 344
Target Start/End: Complemental strand, 4242638 - 4242476
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagttt 281  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||  || |||||| || ||||| ||||||||||||||| ||||||||| ||||    
T  4242638 tatcctgggaggatatgcgctcatgagtcggataaaatcctcaaggacaacgattatgtcacgtctcaggttacttaacagtgtgctgttttgcaggttt 4242539  T
Q  282 cctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttc 344  Q
    |||| ||| ||||||| |||||||||||||||||||||||  |||| |||||| |||||||||    
T  4242538 cctccaatttgatttgcgaagattttgatggagttgtgtcgacaaccaaattcaataagtttc 4242476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 183 - 342
Target Start/End: Complemental strand, 24981231 - 24981072
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacagtgtgttgttttgcaagttt 281  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||| ||||||| ||||| ||| ||| | |||||||||| ||||    
T  24981231 tatcctgggaggatatgtgcttatgaggcggataaaatcctcaaggacgctgactatgtcacgcctcaggttacataatagtattttgttttgcaggttt 24981132  T
Q  282 cctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtt 342  Q
    || |||||   |||||||||| ||||| |||| |||||||  |||||||||||||||||||    
T  24981131 cccctaattaaatttgtgaaggttttg-tggaattgtgtcgacaactaaattcgataagtt 24981072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 213 - 346
Target Start/End: Original strand, 51465563 - 51465695
Alignment:
Q  213 gataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatg 311  Q
    |||||||||  ||||||||||||||||||| |||||||| |||||| ||||||| |||||||  | |||||||||| | |||||||||||||||  ||||    
T  51465563 gataaaatctccaaggacagtgactatgtcacgcctcagattactttacagtgtattgttttttaggtttcctctactttgatttgtgaagatt--gatg 51465660  T
Q  312 gagttgtgtcagcaactaaattcgataagtttctt 346  Q
    ||| |||||| ||||| ||||||||||||||||||    
T  51465661 gagctgtgtcggcaaccaaattcgataagtttctt 51465695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 9111610 - 9111542
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 251  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9111610 tatcctgggaagatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcag 9111542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 190 - 326
Target Start/End: Original strand, 47580452 - 47580588
Alignment:
Q  190 ggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacagtgtgttgttttgcaagtttcctctaa 288  Q
    ||||||||| |||||||||||| ||||||||| ||||||||| |||||||||| ||||||| || |||||| |||||| | ||||| | ||||||||||     
T  47580452 ggaggatattcgcttatgaggcagataaaatcttcaaggacattgactatgtcacgcctcaggtaacttaatagtgtgct-ttttgtaggtttcctctac 47580550  T
Q  289 tctgatttgtgaagattttgatggagttgtgtcagcaa 326  Q
    | |||||||| ||||||| ||||||| |||||| ||||    
T  47580551 tttgatttgttaagatttcgatggagctgtgtcggcaa 47580588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 43254164 - 43254230
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca 250  Q
    |||||||||||||||||||||||||||||| || ||||||| ||||||||||||| |||| |||||||    
T  43254164 tatcctgggaggatatgcgcttatgaggcgaat-aaatccttaaggacagtgactttgtcacgcctca 43254230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 268 - 342
Target Start/End: Original strand, 1953802 - 1953876
Alignment:
Q  268 tgttttgcaagtttcctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtt 342  Q
    ||||||| | |||||||||| | |||||||||||||||||||||| | |||||| ||||| ||||||||||||||    
T  1953802 tgttttgtaggtttcctctactttgatttgtgaagattttgatggggctgtgtcggcaaccaaattcgataagtt 1953876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 38825546 - 38825492
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgact 237  Q
    ||||||||||||||||||| |||||||| |||||||||||| |||||||||||||    
T  38825546 tatcctgggaggatatgcgtttatgaggaggataaaatccttaaggacagtgact 38825492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 24981331 - 24981279
Alignment:
Q  129 aaaatattgagtttctgcgttacatctcctgatatttttaagataaatttgag 181  Q
    ||||||||||||||||| ||||||||||||||||| ||| |||||||||||||    
T  24981331 aaaatattgagtttctgtgttacatctcctgatatctttgagataaatttgag 24981279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 26310464 - 26310520
Alignment:
Q  291 tgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttcttg 347  Q
    |||||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||    
T  26310464 tgatttgtgacgattttgatggagctgtgtcaacaaccaaattcgataagtttcttg 26310520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 1953736 - 1953780
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaag 227  Q
    |||||||||||||||| |||||||||||| |||||||||||||||    
T  1953736 tatcctgggaggatattcgcttatgaggcagataaaatcctcaag 1953780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 38828756 - 38828689
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca 250  Q
    |||||||||| |||||| |||||| |||||||||||||||| ||||| |||||||  ||| |||||||    
T  38828756 tatcctgggaagatatgagcttataaggcggataaaatccttaaggatagtgacttcgtcacgcctca 38828689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 49387674 - 49387608
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca 250  Q
    |||||||||||||||||||||||| ||||| || ||||||| |||| |||||||| |||| |||||||    
T  49387674 tatcctgggaggatatgcgcttataaggcgaat-aaatccttaaggccagtgactttgtcacgcctca 49387608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 1953636 - 1953688
Alignment:
Q  129 aaaatattgagtttctgcgttacatctcctgatatttttaagataaatttgag 181  Q
    ||||| ||||||||||| |||||||||||||| || |||  ||||||||||||    
T  1953636 aaaatgttgagtttctgggttacatctcctgacatctttgtgataaatttgag 1953688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 47580343 - 47580395
Alignment:
Q  129 aaaatattgagtttctgcgttacatctcctgatatttttaagataaatttgag 181  Q
    ||||| ||||||||||| |||||||||||||| || |||  ||||||||||||    
T  47580343 aaaatgttgagtttctgggttacatctcctgacatctttgtgataaatttgag 47580395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 1e-49; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 183 - 342
Target Start/End: Original strand, 44643501 - 44643660
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagttt 281  Q
    |||||| ||||||||||||||||||||||||||| |||| | |||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||    
T  44643501 tatcctaggaggatatgcgcttatgaggcggatagaatc-tgaaggacagtgactatgtcacgcctcaggttacttaacagcgtgttgttttgcaagttt 44643599  T
Q  282 cctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtt 342  Q
    | |||||| |||||||||||||||||||||||| | |||| ||||| ||||||||||||||    
T  44643600 cttctaatttgatttgtgaagattttgatggagctttgtcggcaaccaaattcgataagtt 44643660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 895491 - 895559
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  895491 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgactcag 895559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 6667788 - 6667720
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  6667788 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaagaacagtgactatgtcacgcctcag 6667720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 13010602 - 13010534
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 251  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13010602 tatcctaggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcag 13010534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 20058172 - 20058087
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacagtgtgt 267  Q
    |||| ||| |||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  20058172 tatcgtggaaggatacgcgctaatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggttacataacagtgtgt 20058087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 60 - 181
Target Start/End: Complemental strand, 13010770 - 13010649
Alignment:
Q  60 cagtacagaaaaacatcaaccacatatatactctcat-ttttcatatttctcttattctttactatgaataaaatattgagtttctgcgttacatctcct 158  Q
    |||||||||||| ||||||||||||||||||||||   |||||||||||||||| |||||| || | || |||||||||||||| || ||||||||| ||    
T  13010770 cagtacagaaaa-catcaaccacatatatactctctcattttcatatttctcttgttcttttctctcaacaaaatattgagtttttgggttacatcttct 13010672  T
Q  159 gatatttttaagataaatttgag 181  Q
    ||||| | | ||||| |||||||    
T  13010671 gatatctctgagatatatttgag 13010649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 6671454 - 6671392
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 251  Q
    |||||||||||||||||||      ||||||||||||||||||||||| ||||||||||| ||||||||    
T  6671454 tatcctgggaggatatgcg------aggcggataaaatcctcaaggacggtgactatgtcacgcctcag 6671392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 31767516 - 31767450
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca 250  Q
    |||||| |||||||||| ||||||||||||||| ||||||| ||||| ||||| | |||| |||||||    
T  31767516 tatcctaggaggatatgtgcttatgaggcggat-aaatccttaaggatagtgattttgtcacgcctca 31767450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 43287897 - 43287964
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca 250  Q
    |||||||| | ||||||||||||||||||| |||||  | | ||||||||||||| |||| |||||||    
T  43287897 tatcctggaaagatatgcgcttatgaggcgaataaatcctttaaggacagtgactttgtcacgcctca 43287964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 4e-43; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 183 - 347
Target Start/End: Complemental strand, 26703086 - 26702921
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagttt 281  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||| |||| |||| ||||||||| |||||| ||| ||||    
T  26703086 tatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactaagtcacgcatcaggttacataacagtgttttgtttagcaggttt 26702987  T
Q  282 cctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttcttg 347  Q
    |||||||| |||||||||||| ||||||||||||| ||||  | || ||||||||||| |||||||    
T  26702986 cctctaatttgatttgtgaaggttttgatggagttatgtcgacgaccaaattcgataaatttcttg 26702921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 183 - 347
Target Start/End: Complemental strand, 26972819 - 26972654
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagttt 281  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||| |||| |||| ||||||||| |||||| ||| ||||    
T  26972819 tatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactaagtcacgcatcaggttacataacagtgttttgtttagcaggttt 26972720  T
Q  282 cctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttcttg 347  Q
    |||||||| |||||||||||| ||||||||||||| ||||  | || ||||||||||| |||||||    
T  26972719 cctctaatttgatttgtgaaggttttgatggagttatgtcgacgaccaaattcgataaatttcttg 26972654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 183 - 276
Target Start/End: Original strand, 18594863 - 18594957
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacagtgtgttgttttgca 276  Q
    ||||||| ||| ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||| ||||| ||| ||| | ||||||||||    
T  18594863 tatcctgtgagaatatgcgcttatgaggcggataaaatcttcaaggacagtgacaatgtcacgcctcaggttacataatagtattttgttttgca 18594957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 39292151 - 39292203
Alignment:
Q  187 ctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactat 239  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  39292151 ctggaaggatatgcgcttatgaggcggataaaatccttaaggacagtgactat 39292203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 183 - 218
Target Start/End: Original strand, 13292002 - 13292037
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaa 218  Q
    ||||||||||||||||||||||||||||||||||||    
T  13292002 tatcctgggaggatatgcgcttatgaggcggataaa 13292037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 18594762 - 18594815
Alignment:
Q  128 taaaatattgagtttctgcgttacatctcctgatatttttaagataaatttgag 181  Q
    ||||||||||||||| || ||||||||||||||||| ||| | |||||||||||    
T  18594762 taaaatattgagtttttgggttacatctcctgatatctttgacataaatttgag 18594815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 2e-42; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 183 - 342
Target Start/End: Complemental strand, 39426520 - 39426361
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagttt 281  Q
    |||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||| ||| ||||| | ||||    
T  39426520 tatcttgggaggatattcgcttatgagacggataaaatcctcaaggacagtgactatatcacgcctcagattacttaacagtgcgttattttgtaggttt 39426421  T
Q  282 cctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtt 342  Q
    |||||| | ||||||||||| |||||||||| |||||||| ||||| ||||||||||||||    
T  39426420 cctctactttgatttgtgaaaattttgatgg-gttgtgtccgcaaccaaattcgataagtt 39426361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 190 - 346
Target Start/End: Complemental strand, 3850601 - 3850445
Alignment:
Q  190 ggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaa 288  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| |||| ||||||||||||||||| || |||||||||||    
T  3850601 ggaggatatgcgcttatgaggcgtataaaatcatcaaggacagtgactatgtcacgcctcagattacataacagtgtgttgttttacaggtttcctctaa 3850502  T
Q  289 tctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttctt 346  Q
    | |||||||| ||||  |||||||||   |||| ||||||||||| ||||||||||||    
T  3850501 tttgatttgtaaaga-cttgatggagccctgtcggcaactaaatttgataagtttctt 3850445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 183 - 342
Target Start/End: Complemental strand, 22301220 - 22301061
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacagtgtgttgttttgcaagttt 281  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||| ||| | |||||||||| ||||    
T  22301220 tatcttgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggttacataatagtattttgttttgcaggttt 22301121  T
Q  282 cctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtt 342  Q
    || ||||  |||||||||||| |||||||||| |  ||||  |||| ||||||||||||||    
T  22301120 cc-ctaaattgatttgtgaaggttttgatggaatcatgtcgacaaccaaattcgataagtt 22301061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 183 - 342
Target Start/End: Original strand, 11674049 - 11674201
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcagttacttaacagtgtgttgttttgcaagtttc 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||         ||||| |||||||||| |||||    
T  11674049 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacacctcag-------gaagtgttttgttttgcaggtttc 11674141  T
Q  283 ctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtt 342  Q
    | |||||   |||||||||| |||||||||||| |||||  |||||||||||||||||||    
T  11674142 ccctaattaaatttgtgaaggttttgatggagtcgtgtcgacaactaaattcgataagtt 11674201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 31210138 - 31210076
Alignment:
Q  189 gggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 251  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31210138 gggaggatatgcacttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcag 31210076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 31206695 - 31206627
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 251  Q
    |||||||  ||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||    
T  31206695 tatcctgccaggatatgcgcttatgaggtggataaaatcctcaaagacagtgactatgtcacgcctcag 31206627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 15569615 - 15569682
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 251  Q
    ||||||||||||||||| ||||||||||||||| ||||||  ||||||||||||| |||| ||||||||    
T  15569615 tatcctgggaggatatgtgcttatgaggcggat-aaatccctaaggacagtgactttgtcacgcctcag 15569682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 32352495 - 32352432
Alignment:
Q  185 tcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctc 249  Q
    |||||||||||||||||||||||||||| || ||||||| ||||||||||||| |||| ||||||    
T  32352495 tcctgggaggatatgcgcttatgaggcgaat-aaatccttaaggacagtgactttgtcacgcctc 32352432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 13815787 - 13815853
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca 250  Q
    |||||||||| ||||||||||||||||||| || ||||||| ||||||||||||| |||| |||||||    
T  13815787 tatcctgggaagatatgcgcttatgaggcgaat-aaatccttaaggacagtgactttgtcacgcctca 13815853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 5435031 - 5434982
Alignment:
Q  129 aaaatattgagtttctgcgttacatctcctgatatttttaagataaattt 178  Q
    |||||||||||||| || ||||||||| ||||||||||| ||||||||||    
T  5435031 aaaatattgagtttatgggttacatcttctgatatttttgagataaattt 5434982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 11673949 - 11674002
Alignment:
Q  129 aaaatattgag-tttctgcgttacatctcctgatatttttaagataaatttgag 181  Q
    ||||||||||| |||||| |||||||||| |||||| ||| |||||||||||||    
T  11673949 aaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgag 11674002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 183 - 342
Target Start/End: Complemental strand, 19697914 - 19697762
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcagttacttaacagtgtgttgttttgcaagtttc 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||        ||||| |||||||||| |||||    
T  19697914 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacaatgactatgtcacgcctcagt-------aagtgttttgttttgcaggtttc 19697822  T
Q  283 ctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtt 342  Q
    | |||||   |||||||||| |||||||||||| |||||  |||||||||||||||||||    
T  19697821 ccctaattaaatttgtgaaggttttgatggagtcgtgtcgacaactaaattcgataagtt 19697762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 192 - 314
Target Start/End: Original strand, 15518074 - 15518197
Alignment:
Q  192 aggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcagttacttaacagtgtgttgttttgcaagtttcctct-aatc 290  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||| || ||  |||||||||||||||||||||||||| ||||||| | |||     
T  15518074 aggatatgcgcttatgaggcggatataatcctcaaggaaagtgactatgtcacgtctaggttacttaacagtgtgttgttttgcaggtttcctataaatt 15518173  T
Q  291 tgatttgtgaagattttgatggag 314  Q
     ||||||||||||||| |||||||    
T  15518174 agatttgtgaagatttcgatggag 15518197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 6591917 - 6591838
Alignment:
Q  184 atcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacag 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  6591917 atcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactacgtcacgcctcaggttacttaacag 6591838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 278 - 347
Target Start/End: Original strand, 19976193 - 19976262
Alignment:
Q  278 gtttcctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttcttg 347  Q
    |||| |||| || |||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||    
T  19976193 gttttctcttatttgatttgtgaagattttgatggagttttgtcggcaacaaaattcgataagtttcttg 19976262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 24045001 - 24044935
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca 250  Q
    |||||||||||||||||||||||||||||| || ||||||| ||||||||||||| |||| |||||||    
T  24045001 tatcctgggaggatatgcgcttatgaggcgaat-aaatccttaaggacagtgactttgtcacgcctca 24044935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 293 - 344
Target Start/End: Complemental strand, 6591808 - 6591757
Alignment:
Q  293 atttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttc 344  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  6591808 atttgtgaagattttgatggagctgtgtcggcaaccaaattcgataagtttc 6591757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 15517989 - 15518041
Alignment:
Q  129 aaaatattgagtttctgcgttacatctcctgatatttttaagataaatttgag 181  Q
    ||||||||||||||||| |||||||||||| |||| ||||||||||| |||||    
T  15517989 aaaatattgagtttctgggttacatctcctcatatctttaagataaagttgag 15518041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 2936205 - 2936163
Alignment:
Q  194 gatatgcgcttatgaggcggataaaatcctcaaggacagtgact 237  Q
    |||||||||||||||||||||| ||||||| |||||||||||||    
T  2936205 gatatgcgcttatgaggcggat-aaatccttaaggacagtgact 2936163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 19973730 - 19973784
Alignment:
Q  196 tatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 251  Q
    |||||||||||||||||||| ||||| | ||||||||||||| |||| ||||||||    
T  19973730 tatgcgcttatgaggcggat-aaatctttaaggacagtgactttgtcacgcctcag 19973784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 14579668 - 14579716
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacag 232  Q
    ||||||| |||||||| |||||||||||||||| ||||||| ||||||||    
T  14579668 tatcctgagaggatattcgcttatgaggcggat-aaatccttaaggacag 14579716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 19698015 - 19697962
Alignment:
Q  129 aaaatattgag-tttctgcgttacatctcctgatatttttaagataaatttgag 181  Q
    ||||||||||| |||||| |||||||||| |||||| ||| |||||||||||||    
T  19698015 aaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgag 19697962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 19973805 - 19973870
Alignment:
Q  278 gtttcctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagttt 343  Q
    |||| |||| || |||||||  ||||||||||||||||| | || ||||| |||||||||||||||    
T  19973805 gttttctcttatttgatttggaaagattttgatggagttttctcggcaacaaaattcgataagttt 19973870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 24041698 - 24041634
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcct 248  Q
    |||||| ||||||||||||||||||||||| || |||| || || |||||||||| |||| |||||    
T  24041698 tatcctaggaggatatgcgcttatgaggcgaat-aaattcttaaagacagtgactttgtcacgcct 24041634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 6e-36; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 202 - 342
Target Start/End: Complemental strand, 14433649 - 14433508
Alignment:
Q  202 cttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtga 300  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||| |||| ||||||||| |||||||||| ||||| |||||| | ||||||||    
T  14433649 cttatgaggcggataaaatccacaaggacagtgactatgtcacgcctcaggttacataacagtgtattgttttgcaggtttcttctaatttaatttgtga 14433550  T
Q  301 agattttgatggagttgtgtcagcaactaaattcgataagtt 342  Q
    ||||||||||||||   ||||  ||| |||||||||||||||    
T  14433549 agattttgatggagccatgtcgacaattaaattcgataagtt 14433508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 188 - 342
Target Start/End: Complemental strand, 18739175 - 18739029
Alignment:
Q  188 tgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcagttacttaacagtgtgttgttttgcaagtttcctcta 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||       |  ||||| |||||||||| |||||| |||    
T  18739175 tgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctca-------agaagtgttttgttttgcaggtttcc-cta 18739084  T
Q  288 atctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtt 342  Q
    ||   |||||||||| |||||||||||| |||||  |||||||||||||||||||    
T  18739083 attaaatttgtgaaggttttgatggagtcgtgtcgacaactaaattcgataagtt 18739029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 2590549 - 2590617
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 251  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  2590549 tatcctgggaggatatgcgcttatgaggcgaataaaatcctcaaggacagtgactatgtcacgcctcag 2590617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 21189450 - 21189518
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 251  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21189450 tatccggggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcag 21189518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 35969335 - 35969278
Alignment:
Q  194 gatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 251  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||    
T  35969335 gatatgcgcttttgaggcggataaaatcttcaaggacagtgactatgtcacgcctcag 35969278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 1043193 - 1043244
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtg 234  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  1043193 tatcctgggaggatatgcgcctatgagacggataaaatcctcaaggacagtg 1043244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 10941489 - 10941428
Alignment:
Q  187 ctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca 250  Q
    |||||||||||||||||||||||||| || ||||||| ||||||||||||| |||| |||||||    
T  10941489 ctgggaggatatgcgcttatgaggcgaat-aaatccttaaggacagtgact-tgtcacgcctca 10941428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 10947358 - 10947297
Alignment:
Q  187 ctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca 250  Q
    |||||||||||||||||||||||||| || ||||||| ||||||||||||| |||| |||||||    
T  10947358 ctgggaggatatgcgcttatgaggcgaat-aaatccttaaggacagtgact-tgtcacgcctca 10947297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 2590448 - 2590501
Alignment:
Q  128 taaaatattgagtttctgcgttacatctcctgatatttttaagataaatttgag 181  Q
    |||||||||||||||||| |||| |||||||||||| | | |||||||||||||    
T  2590448 taaaatattgagtttctgggttatatctcctgatatctatgagataaatttgag 2590501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 218
Target Start/End: Complemental strand, 27083158 - 27083123
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaa 218  Q
    |||||||||||||||||||||| |||||||||||||    
T  27083158 tatcctgggaggatatgcgcttgtgaggcggataaa 27083123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 183 - 342
Target Start/End: Original strand, 82670 - 82822
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcagttacttaacagtgtgttgttttgcaagtttc 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||         ||||| ||| |||||| ||||     
T  82670 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggatagtgactatgtcacgcctcag-------gaagtgttttgatttgcaggtttt 82762  T
Q  283 ctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtt 342  Q
    ||| |||   |||||||||| |||||||||| | |||||  ||||||||||||| |||||    
T  82763 ctcaaattaaatttgtgaaggttttgatggaatcgtgtcgacaactaaattcgacaagtt 82822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 110169 - 110236
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca 250  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  110169 tatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctca 110236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 127748 - 127816
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 251  Q
    |||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||    
T  127748 tatcatgggaggatatgcgtttctgaggcggataaaatcctcaaggacagtgactatgtcacgcctcag 127816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 251 - 342
Target Start/End: Complemental strand, 11634167 - 11634076
Alignment:
Q  251 gttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtt 342  Q
    ||||| |||||  ||||||||||||| |||||||||||| ||||||||||||||||||||| || |||||| ||||  ||||||||||||||    
T  11634167 gttacataacaacgtgttgttttgcaggtttcctctaatttgatttgtgaagattttgatgaagctgtgtctgcaatcaaattcgataagtt 11634076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 19930100 - 19930038
Alignment:
Q  187 ctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca 250  Q
    ||||||||||||||||||||||||||||| ||||||| |||||| |||||| |||| |||||||    
T  19930100 ctgggaggatatgcgcttatgaggcggat-aaatccttaaggacggtgactttgtcacgcctca 19930038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 42253630 - 42253564
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca 250  Q
    |||||| |||||||||||||||||||||||| | ||||||| ||||||||||||| |||| |||||||    
T  42253630 tatccttggaggatatgcgcttatgaggcgggt-aaatccttaaggacagtgactttgtcacgcctca 42253564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 9372280 - 9372227
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgact 237  Q
    |||||||||| ||||||||||||||||||| || ||||||| |||||||||||||    
T  9372280 tatcctgggacgatatgcgcttatgaggcgaat-aaatccttaaggacagtgact 9372227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 19935297 - 19935237
Alignment:
Q  189 gggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca 250  Q
    ||||| |||||||||||||||| ||||||| |||| ||||||||||||| |||| |||||||    
T  19935297 gggagaatatgcgcttatgaggaggataaa-tccttaaggacagtgactttgtcacgcctca 19935237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 11634239 - 11634195
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaag 227  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||||    
T  11634239 tatcctgggaggatatgcgtttacgaggtggataaaatcctcaag 11634195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 2353245 - 2353298
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgact 237  Q
    ||||||||||||||| || |||||||||||||| ||||||| ||||||| |||||    
T  2353245 tatcctgggaggataagcacttatgaggcggat-aaatccttaaggacaatgact 2353298  T

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Target: scaffold0076 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 6829 - 6759
Alignment:
Q  183 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcagtt 253  Q
    |||| ||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  6829 tatcatggaaggatatgcacttatgaggcggataaaatcctcaatgacagtgactatgtcacgcctcagtt 6759  T

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