View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9505_low_4 (Length: 264)
Name: NF9505_low_4
Description: NF9505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9505_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 31704140 - 31704367
Alignment:
| Q |
20 |
agaaaggtaaacaagggaaagtgattgtgatagacatggtgttggaaagtgagaaggaaagcattaaagaatcagttgaaacccaactcttctttgatat |
119 |
Q |
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| T |
31704140 |
agaaaggtaaacaagggaaagtgattgtgatagacatggtgttggaaagtgagaaggaaagcattaatgaatcagttgaaacacaactcttctttgatat |
31704239 |
T |
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| Q |
120 |
gttgatgatggtagtactcactggaaaagagagaaacgagaaagaatggattaagttgatttcctctgctggttttagtgactacaagattactccaatt |
219 |
Q |
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|||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31704240 |
gttgatgatggtagtacttgcaggaaaagagagaaacaagaaagaatggattaagttgatttcctctgctggttttagcgactacaagattactccaatt |
31704339 |
T |
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| Q |
220 |
ttaggtttaaggtcactaattgagatct |
247 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
31704340 |
ttaggtttaaggtcactaattgagatct |
31704367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 31684825 - 31685029
Alignment:
| Q |
20 |
agaaaggtaaacaagggaaagtgattgtgatagacatggtgttggaaagtgagaaggaaagcattaaagaatcagttgaaacccaactcttctttgatat |
119 |
Q |
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| T |
31684825 |
agaaaggtaaagaagggaaggtggttatcttcgacaaggttttcgacagtgagaagggaaacattaatgaatcagttgaaacacaactcttctttgatat |
31684924 |
T |
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| Q |
120 |
gttgatgatggtagtactcactggaaaagagagaaacgagaaagaatggattaagttgatttcctctgctggttttagtgactacaagattactccaatt |
219 |
Q |
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| T |
31684925 |
gtttatgatggtagtatttgcaggaaaagagagaaacgagaaagaatggattaagttgatttcctctgctggttttagtgactacaagattactccaatt |
31685024 |
T |
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| Q |
220 |
ttagg |
224 |
Q |
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||||| |
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| T |
31685025 |
ttagg |
31685029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 31735496 - 31735706
Alignment:
| Q |
20 |
agaaaggtaaacaagggaaagtgattgtgatagacatggtgttggaaagtgagaaggaaagcattaaagaatcagttgaaacccaactcttctttgatat |
119 |
Q |
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||||||||||| |||| || || || | |||||||||||||| || ||||||||| | || ||| ||||| |||||||| |||||||||||||||| |
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| T |
31735496 |
agaaaggtaaagaaggaaaggtagttatcatagacatggtgttagattgtgagaagggagacaataatgaatcggttgaaacaaaactcttctttgatat |
31735595 |
T |
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| Q |
120 |
gttgatgatggtagtactcactggaaaagagagaaacgagaaagaatggattaagttgatttcctctgctggttttagtgactacaagattactccaatt |
219 |
Q |
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||||||||||||| |||||| ||||||||||||| | ||||||||||| |||| |||||||| || || |||||| ||||||||||||| ||||||||| |
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| T |
31735596 |
gttgatgatggtaacactcaccggaaaagagagaaccaagaaagaatgggttaaattgatttcttcggccggtttttgtgactacaagataactccaatt |
31735695 |
T |
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| Q |
220 |
ttaggtttaag |
230 |
Q |
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||||| ||||| |
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| T |
31735696 |
ttagggttaag |
31735706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 31712550 - 31712777
Alignment:
| Q |
20 |
agaaaggtaaacaagggaaagtgattgtgatagacatggtgttggaaagtgagaaggaaagcattaaagaatcagttgaaacccaactcttctttgatat |
119 |
Q |
| |
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||||||||||| |||| || || || | |||||||||||||| || ||||||||| | || ||| |||||||||||||| ||||||||||||||||| |
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| T |
31712550 |
agaaaggtaaagaaggaaaggtagttatcatagacatggtgttagattgtgagaagggagacaataatgaatcagttgaaacacaactcttctttgatat |
31712649 |
T |
|
| Q |
120 |
gttgatgatggtagtactcactggaaaagagagaaacgagaaagaatggattaagttgatttcctctgctggttttagtgactacaagattactccaatt |
219 |
Q |
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||||||||||| || | || |||||||||||||| ||||| |||||||| || |||||||| | |||||||||| |||||||||||| || |||||| |
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| T |
31712650 |
gttgatgatggccctattaacaggaaaagagagaaatgagaaggaatggatgaaattgatttctttggctggttttaatgactacaagataacaccaatt |
31712749 |
T |
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| Q |
220 |
ttaggtttaaggtcactaattgagatct |
247 |
Q |
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|||| |||||||| | |||||||||| |
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| T |
31712750 |
ctaggcttaaggtccatgattgagatct |
31712777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 31715477 - 31715687
Alignment:
| Q |
20 |
agaaaggtaaacaagggaaagtgattgtgatagacatggtgttggaaagtgagaaggaaagcattaaagaatcagttgaaacccaactcttctttgatat |
119 |
Q |
| |
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||||||||||| |||| || |||||| | |||||||||||| |||| | ||||||| || || | ||||| | | |||| ||||||||||||||||| |
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| T |
31715477 |
agaaaggtaaagaaggaaaggtgattatcatagacatggtggtggagaaagagaagggaaacagt---gaatcggctaaaacacaactcttctttgatat |
31715573 |
T |
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| Q |
120 |
gttgatgatggtagtactcactggaaaagagagaaacgagaaagaatggattaagttgatttcctctgctggttttagtgactacaagattactccaatt |
219 |
Q |
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| | |||||||| | ||| ||||||||||||| | ||||||||||| ||||||||||||||||||| || || | |||||||||||| |||||| | |
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| T |
31715574 |
gctcatgatggtgttggccaccggaaaagagagaaccaagaaagaatgggttaagttgatttcctctgcagggttcaatgactacaagataactccagta |
31715673 |
T |
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| Q |
220 |
ttaggtttaaggtc |
233 |
Q |
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|| ||||||||||| |
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| T |
31715674 |
ttgggtttaaggtc |
31715687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 30571105 - 30571178
Alignment:
| Q |
141 |
tggaaaagagagaaacgagaaagaatggattaagttgatttcctctgctggttttagtgactacaagattactc |
214 |
Q |
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||||||||||||||| || ||||||||| ||| ||| ||| ||||||||||||||| |||||||||| |||| |
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| T |
30571105 |
tggaaaagagagaaatgaaaaagaatggtctaatttgtttttatctgctggttttagtaactacaagataactc |
30571178 |
T |
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