View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9505_low_6 (Length: 256)
Name: NF9505_low_6
Description: NF9505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9505_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 37752085 - 37751853
Alignment:
| Q |
8 |
ttggtgtttggaggagttggtgcattggttggaaaaactcctttgatgaggtcttgtgttagagttcttattggaggttggatggctatggctattactt |
107 |
Q |
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| T |
37752085 |
ttggtgtttggaggagttggtgcattggttggaaaaactcctttgatgaggtcttgtgttagagttcttattggaggttggatggctatggccattactt |
37751986 |
T |
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| Q |
108 |
ttggtttcaccaaattgattggcaccactggactttgatcactttaatagtgttatcgttttatttcatgataaatgttagtccttagttgttattttta |
207 |
Q |
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| T |
37751985 |
ttggtttcaccaaattgattggcaccactggactttgatcactttaatagtgttatcgttttatttcatgataaatgttagtccttagttgttatttttg |
37751886 |
T |
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| Q |
208 |
tttgtgggaaaattgaactcgcgaccttcttat |
240 |
Q |
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| T |
37751885 |
tttgtgggaaaattgaactcgtgaccttcttat |
37751853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 37742633 - 37742809
Alignment:
| Q |
8 |
ttggtgtttggaggagttggtgcattggttggaaaaactcctttgatgaggtcttgtgttagagttcttattggaggttggatggctatggctattactt |
107 |
Q |
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| T |
37742633 |
ttggtgtttggaggagttggtgcattggttggaaaaactcctttgatgaggtcttgtgttagagttcttattggaggttggatggctatggccattactt |
37742732 |
T |
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| Q |
108 |
ttggtttcaccaaattgattggcaccactggactttgatcactttaatagtgttatcgttttatttcatgataaatg |
184 |
Q |
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| T |
37742733 |
ttggtttcactaaattgattggcaatactggactttgatcactttaataatgttatcgttttatttcgtgataaatg |
37742809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 37749703 - 37749840
Alignment:
| Q |
8 |
ttggtgtttggaggagttggtgcattggttggaaaaactcctttgatgaggtcttgtgttagagttcttattggaggttggatggctatggctattactt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37749703 |
ttggtgtttggaggagttggtgcattggttggaaaaactcctttgatgaggtcttgtgttagagttcttattggaggttggatggctatggccattactt |
37749802 |
T |
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| Q |
108 |
ttggtttcaccaaattgattggcaccactggactttga |
145 |
Q |
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| T |
37749803 |
ttggtttcactaaattgattggcaatactggactttga |
37749840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 37733134 - 37733069
Alignment:
| Q |
58 |
gtcttgtgttagagttcttattggaggttggatggctatggctattacttttggtttcaccaaatt |
123 |
Q |
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| T |
37733134 |
gtcttgtgttagagtggtggttggaggttggatggctatggctattacctttggcttaaccaaatt |
37733069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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