View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9505_low_7 (Length: 250)
Name: NF9505_low_7
Description: NF9505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9505_low_7 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 121 - 250
Target Start/End: Original strand, 6439057 - 6439186
Alignment:
| Q |
121 |
cacaattgaccattctctctcctcaatggaaaccggcgaacatgttctccttccagccaccgccaccgctccaaccgccggcggcgattccaccgcctcg |
220 |
Q |
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| T |
6439057 |
cacaattgaccattctctctcctcaatggaaaccggcgaacatgttctccttccagccaccgccaccgctccaaccgccggcggcgattccaccgcctcg |
6439156 |
T |
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| Q |
221 |
tctcctccgctcggtgattctgttatcatc |
250 |
Q |
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| T |
6439157 |
tctcctccgctcggtgattctgttatcatc |
6439186 |
T |
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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 6438943 - 6438986
Alignment:
| Q |
9 |
aacacagacaagtttcactataaaatgacgcgatctgagaaacc |
52 |
Q |
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| T |
6438943 |
aacatagacaagtttcactataaaatgacgcgatctgagaaacc |
6438986 |
T |
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