View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9505_low_9 (Length: 220)
Name: NF9505_low_9
Description: NF9505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9505_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 15118395 - 15118199
Alignment:
| Q |
13 |
gatcttccttcatgcctttcaaacgaaccatttttt--cctctttcatcatacaaaatttcaaaatatggtccatcctccctattatagtttgtccacac |
110 |
Q |
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| T |
15118395 |
gatcttccttcatgcctttcaaacgaaccattttttttcctctttcatcatacaaaatttcaaaatatggtccatcctccctattatagtttgtccacac |
15118296 |
T |
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| Q |
111 |
tatatatattttcttactttgttttcaacctcgctcacccaccctttcatccaccacctccttcatgctcacgttcattcaccactacaccaacaccaaa |
210 |
Q |
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| T |
15118295 |
tatat----tttcttactttgttttcaacctccctcacccaccctttcatccaccacctccttcatgctcacgttcattcaccactacaccaacatcaaa |
15118200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 211
Target Start/End: Original strand, 15117442 - 15117518
Alignment:
| Q |
136 |
caacctcgctcacccacccttt-catccaccacctccttcatgctcacgttcattcaccactacaccaacaccaaac |
211 |
Q |
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||||||| ||||||||||||| | ||||||||||| ||||||| | | |||| || |||||||||||||| ||||| |
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| T |
15117442 |
caacctctttcacccacccttttcttccaccacctcattcatgcccccattcactccccactacaccaacatcaaac |
15117518 |
T |
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