View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9506_low_2 (Length: 439)

Name: NF9506_low_2
Description: NF9506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9506_low_2
NF9506_low_2
[»] chr1 (9 HSPs)
chr1 (38-424)||(36752905-36753292)
chr1 (12-41)||(16987762-16987791)
chr1 (12-41)||(18104763-18104792)
chr1 (12-41)||(19893673-19893702)
chr1 (12-41)||(20748454-20748483)
chr1 (12-41)||(36218839-36218868)
chr1 (12-41)||(49579943-49579972)
chr1 (12-40)||(30633518-30633546)
chr1 (12-40)||(33169877-33169905)
[»] chr3 (7 HSPs)
chr3 (12-52)||(46962503-46962543)
chr3 (12-41)||(47451227-47451256)
chr3 (12-40)||(22607096-22607124)
chr3 (12-40)||(25396272-25396300)
chr3 (12-40)||(34995418-34995446)
chr3 (12-40)||(38173781-38173809)
chr3 (12-40)||(46710708-46710736)
[»] chr5 (8 HSPs)
chr5 (11-41)||(38534505-38534535)
chr5 (12-41)||(4461834-4461863)
chr5 (12-41)||(11352399-11352428)
chr5 (12-41)||(21837334-21837363)
chr5 (12-41)||(35612222-35612251)
chr5 (12-40)||(5244768-5244796)
chr5 (12-40)||(11112639-11112667)
chr5 (12-40)||(34010317-34010345)
[»] scaffold0125 (1 HSPs)
scaffold0125 (12-41)||(21629-21658)
[»] chr8 (7 HSPs)
chr8 (12-41)||(2827203-2827232)
chr8 (12-45)||(11735665-11735698)
chr8 (12-41)||(12179285-12179314)
chr8 (12-41)||(12423713-12423742)
chr8 (12-41)||(18173539-18173568)
chr8 (12-41)||(27140960-27140989)
chr8 (12-41)||(32800218-32800247)
[»] chr7 (8 HSPs)
chr7 (12-41)||(36622073-36622102)
chr7 (12-41)||(38574562-38574591)
chr7 (12-40)||(1730673-1730701)
chr7 (16-48)||(18443678-18443710)
chr7 (12-40)||(22202678-22202706)
chr7 (12-40)||(22235115-22235143)
chr7 (12-40)||(36185761-36185789)
chr7 (12-40)||(38158828-38158856)
[»] chr6 (2 HSPs)
chr6 (12-45)||(15148214-15148247)
chr6 (12-40)||(35117111-35117139)
[»] chr4 (11 HSPs)
chr4 (12-41)||(13427846-13427875)
chr4 (12-41)||(26487784-26487813)
chr4 (12-41)||(49118943-49118972)
chr4 (12-40)||(5512165-5512193)
chr4 (12-40)||(6785976-6786004)
chr4 (12-40)||(19326575-19326603)
chr4 (12-40)||(19878954-19878982)
chr4 (12-40)||(26618893-26618921)
chr4 (12-40)||(35822537-35822565)
chr4 (12-40)||(48530935-48530963)
chr4 (12-40)||(49013694-49013722)
[»] chr2 (10 HSPs)
chr2 (12-41)||(26648746-26648775)
chr2 (12-41)||(27306465-27306494)
chr2 (12-41)||(31771194-31771223)
chr2 (12-41)||(31838137-31838166)
chr2 (12-41)||(31900694-31900723)
chr2 (12-41)||(41121134-41121163)
chr2 (12-40)||(2035604-2035632)
chr2 (12-40)||(14390862-14390890)
chr2 (13-41)||(27377644-27377672)
chr2 (12-40)||(40443459-40443487)


Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 38 - 424
Target Start/End: Complemental strand, 36753292 - 36752905
Alignment:
Q  38 tatactaatttactccttactaggaagttacaaaacctatcaaattcactatgaggtgaatatatgcaagagttgttataggcttacaacattaataa-t 136  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36753292 tataccaatttactccttactaggaagttacaaaacctatcaaattcactatgaggtgaatatatgcaagagttgttataggcttacaacattaataaat 36753193  T
Q  137 tacataaatacaannnnnnnctatttatcggttctaattcattcatgtgtgaataccattatatatattttgagcaatccaatcaaatcacgctgaaata 236  Q
    |||||| ||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36753192 tacatatatacaaattttttctatttatcggttctaattcattcatgtgtgaataccattatatatattttgagcaatccaatcaaatcacgctgaaata 36753093  T
Q  237 aaaacgagcaagacaaaaatattagttataatatattactttgtttaagtttcttaatgagtttaattatagttgatttcactatgcaaatgcaagtact 336  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  36753092 aaaacgagcaagacaaaaagattagttataatatattactttgtttaagtttcttaatgagttcaattatagttgatttcactatccaaatgcaagtact 36752993  T
Q  337 tatttttgtcccttctttatctaaccttcagaaccaaatgaaaattattaaaaacaaaccaaaactaatggtacacataatagaaaat 424  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36752992 tatttttgtcccttctttatctaaccttcagaaccaaatgaaaaatattaaaaacaaaccaaaactaatggtacacataatagaaaat 36752905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 16987791 - 16987762
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  16987791 atagggaccaaaaacatatttaaccctata 16987762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 18104763 - 18104792
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  18104763 atagggaccaaaaacatatttaaccctata 18104792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 19893702 - 19893673
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  19893702 atagggaccaaaaacatatttaaccctata 19893673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 20748483 - 20748454
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  20748483 atagggaccaaaaacatatttaaccctata 20748454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 36218868 - 36218839
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  36218868 atagggaccaaaaacatatttaaccctata 36218839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 49579972 - 49579943
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  49579972 atagggaccaaaaacatatttaaccctata 49579943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 30633518 - 30633546
Alignment:
Q  12 atagggaccaaaaacatatttaaccctat 40  Q
    |||||||||||||||||||||||||||||    
T  30633518 atagggaccaaaaacatatttaaccctat 30633546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 33169905 - 33169877
Alignment:
Q  12 atagggaccaaaaacatatttaaccctat 40  Q
    |||||||||||||||||||||||||||||    
T  33169905 atagggaccaaaaacatatttaaccctat 33169877  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 46962503 - 46962543
Alignment:
Q  12 atagggaccaaaaacatatttaaccctatactaatttactc 52  Q
    |||||||||||||||||||||||||||||| ||||| ||||    
T  46962503 atagggaccaaaaacatatttaaccctatattaattgactc 46962543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 47451227 - 47451256
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  47451227 atagggaccaaaaacatatttaaccctata 47451256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 22607124 - 22607096
Alignment:
Q  12 atagggaccaaaaacatatttaaccctat 40  Q
    |||||||||||||||||||||||||||||    
T  22607124 atagggaccaaaaacatatttaaccctat 22607096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 25396300 - 25396272
Alignment:
Q  12 atagggaccaaaaacatatttaaccctat 40  Q
    |||||||||||||||||||||||||||||    
T  25396300 atagggaccaaaaacatatttaaccctat 25396272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 34995446 - 34995418
Alignment:
Q  12 atagggaccaaaaacatatttaaccctat 40  Q
    |||||||||||||||||||||||||||||    
T  34995446 atagggaccaaaaacatatttaaccctat 34995418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 38173809 - 38173781
Alignment:
Q  12 atagggaccaaaaacatatttaaccctat 40  Q
    |||||||||||||||||||||||||||||    
T  38173809 atagggaccaaaaacatatttaaccctat 38173781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 46710708 - 46710736
Alignment:
Q  12 atagggaccaaaaacatatttaaccctat 40  Q
    |||||||||||||||||||||||||||||    
T  46710708 atagggaccaaaaacatatttaaccctat 46710736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 41
Target Start/End: Original strand, 38534505 - 38534535
Alignment:
Q  11 catagggaccaaaaacatatttaaccctata 41  Q
    |||||||||||||||||||||||||||||||    
T  38534505 catagggaccaaaaacatatttaaccctata 38534535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 4461863 - 4461834
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  4461863 atagggaccaaaaacatatttaaccctata 4461834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 11352399 - 11352428
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  11352399 atagggaccaaaaacatatttaaccctata 11352428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 21837334 - 21837363
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  21837334 atagggaccaaaaacatatttaaccctata 21837363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 35612222 - 35612251
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  35612222 atagggaccaaaaacatatttaaccctata 35612251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 5244768 - 5244796
Alignment:
Q  12 atagggaccaaaaacatatttaaccctat 40  Q
    |||||||||||||||||||||||||||||    
T  5244768 atagggaccaaaaacatatttaaccctat 5244796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 11112667 - 11112639
Alignment:
Q  12 atagggaccaaaaacatatttaaccctat 40  Q
    |||||||||||||||||||||||||||||    
T  11112667 atagggaccaaaaacatatttaaccctat 11112639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 34010317 - 34010345
Alignment:
Q  12 atagggaccaaaaacatatttaaccctat 40  Q
    |||||||||||||||||||||||||||||    
T  34010317 atagggaccaaaaacatatttaaccctat 34010345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 21658 - 21629
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  21658 atagggaccaaaaacatatttaaccctata 21629  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 2827203 - 2827232
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  2827203 atagggaccaaaaacatatttaaccctata 2827232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 11735665 - 11735698
Alignment:
Q  12 atagggaccaaaaacatatttaaccctatactaa 45  Q
    |||||||||||||||||||||||||||| |||||    
T  11735665 atagggaccaaaaacatatttaaccctaaactaa 11735698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 12179314 - 12179285
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  12179314 atagggaccaaaaacatatttaaccctata 12179285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 12423742 - 12423713
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  12423742 atagggaccaaaaacatatttaaccctata 12423713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 18173539 - 18173568
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  18173539 atagggaccaaaaacatatttaaccctata 18173568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 27140989 - 27140960
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  27140989 atagggaccaaaaacatatttaaccctata 27140960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 32800218 - 32800247
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  32800218 atagggaccaaaaacatatttaaccctata 32800247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 36622073 - 36622102
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  36622073 atagggaccaaaaacatatttaaccctata 36622102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 38574591 - 38574562
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  38574591 atagggaccaaaaacatatttaaccctata 38574562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 1730701 - 1730673
Alignment:
Q  12 atagggaccaaaaacatatttaaccctat 40  Q
    |||||||||||||||||||||||||||||    
T  1730701 atagggaccaaaaacatatttaaccctat 1730673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 18443678 - 18443710
Alignment:
Q  16 ggaccaaaaacatatttaaccctatactaattt 48  Q
    |||||||||||||||||||||||||| ||||||    
T  18443678 ggaccaaaaacatatttaaccctataataattt 18443710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 22202678 - 22202706
Alignment:
Q  12 atagggaccaaaaacatatttaaccctat 40  Q
    |||||||||||||||||||||||||||||    
T  22202678 atagggaccaaaaacatatttaaccctat 22202706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 22235143 - 22235115
Alignment:
Q  12 atagggaccaaaaacatatttaaccctat 40  Q
    |||||||||||||||||||||||||||||    
T  22235143 atagggaccaaaaacatatttaaccctat 22235115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 36185789 - 36185761
Alignment:
Q  12 atagggaccaaaaacatatttaaccctat 40  Q
    |||||||||||||||||||||||||||||    
T  36185789 atagggaccaaaaacatatttaaccctat 36185761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 38158856 - 38158828
Alignment:
Q  12 atagggaccaaaaacatatttaaccctat 40  Q
    |||||||||||||||||||||||||||||    
T  38158856 atagggaccaaaaacatatttaaccctat 38158828  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 15148214 - 15148247
Alignment:
Q  12 atagggaccaaaaacatatttaaccctatactaa 45  Q
    |||||||||||||||||||||||||||| |||||    
T  15148214 atagggaccaaaaacatatttaaccctaaactaa 15148247  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 35117139 - 35117111
Alignment:
Q  12 atagggaccaaaaacatatttaaccctat 40  Q
    |||||||||||||||||||||||||||||    
T  35117139 atagggaccaaaaacatatttaaccctat 35117111  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 13427875 - 13427846
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  13427875 atagggaccaaaaacatatttaaccctata 13427846  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 26487813 - 26487784
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  26487813 atagggaccaaaaacatatttaaccctata 26487784  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 49118972 - 49118943
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  49118972 atagggaccaaaaacatatttaaccctata 49118943  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 5512165 - 5512193
Alignment:
Q  12 atagggaccaaaaacatatttaaccctat 40  Q
    |||||||||||||||||||||||||||||    
T  5512165 atagggaccaaaaacatatttaaccctat 5512193  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 6786004 - 6785976
Alignment:
Q  12 atagggaccaaaaacatatttaaccctat 40  Q
    |||||||||||||||||||||||||||||    
T  6786004 atagggaccaaaaacatatttaaccctat 6785976  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 19326603 - 19326575
Alignment:
Q  12 atagggaccaaaaacatatttaaccctat 40  Q
    |||||||||||||||||||||||||||||    
T  19326603 atagggaccaaaaacatatttaaccctat 19326575  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 19878982 - 19878954
Alignment:
Q  12 atagggaccaaaaacatatttaaccctat 40  Q
    |||||||||||||||||||||||||||||    
T  19878982 atagggaccaaaaacatatttaaccctat 19878954  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 26618893 - 26618921
Alignment:
Q  12 atagggaccaaaaacatatttaaccctat 40  Q
    |||||||||||||||||||||||||||||    
T  26618893 atagggaccaaaaacatatttaaccctat 26618921  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 35822565 - 35822537
Alignment:
Q  12 atagggaccaaaaacatatttaaccctat 40  Q
    |||||||||||||||||||||||||||||    
T  35822565 atagggaccaaaaacatatttaaccctat 35822537  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 48530935 - 48530963
Alignment:
Q  12 atagggaccaaaaacatatttaaccctat 40  Q
    |||||||||||||||||||||||||||||    
T  48530935 atagggaccaaaaacatatttaaccctat 48530963  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 49013694 - 49013722
Alignment:
Q  12 atagggaccaaaaacatatttaaccctat 40  Q
    |||||||||||||||||||||||||||||    
T  49013694 atagggaccaaaaacatatttaaccctat 49013722  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 26648746 - 26648775
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  26648746 atagggaccaaaaacatatttaaccctata 26648775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 27306465 - 27306494
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  27306465 atagggaccaaaaacatatttaaccctata 27306494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 31771223 - 31771194
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  31771223 atagggaccaaaaacatatttaaccctata 31771194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 31838166 - 31838137
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  31838166 atagggaccaaaaacatatttaaccctata 31838137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 31900723 - 31900694
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  31900723 atagggaccaaaaacatatttaaccctata 31900694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 41121134 - 41121163
Alignment:
Q  12 atagggaccaaaaacatatttaaccctata 41  Q
    ||||||||||||||||||||||||||||||    
T  41121134 atagggaccaaaaacatatttaaccctata 41121163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 2035632 - 2035604
Alignment:
Q  12 atagggaccaaaaacatatttaaccctat 40  Q
    |||||||||||||||||||||||||||||    
T  2035632 atagggaccaaaaacatatttaaccctat 2035604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 14390890 - 14390862
Alignment:
Q  12 atagggaccaaaaacatatttaaccctat 40  Q
    |||||||||||||||||||||||||||||    
T  14390890 atagggaccaaaaacatatttaaccctat 14390862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 27377672 - 27377644
Alignment:
Q  13 tagggaccaaaaacatatttaaccctata 41  Q
    |||||||||||||||||||||||||||||    
T  27377672 tagggaccaaaaacatatttaaccctata 27377644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 40443487 - 40443459
Alignment:
Q  12 atagggaccaaaaacatatttaaccctat 40  Q
    |||||||||||||||||||||||||||||    
T  40443487 atagggaccaaaaacatatttaaccctat 40443459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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