View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9506_low_4 (Length: 302)
Name: NF9506_low_4
Description: NF9506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9506_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 7774882 - 7774591
Alignment:
| Q |
1 |
ctaaatttcttagaaatatgagtccacagtgaattaaagttgatgtaagaattgaaatgaatataattgtgatatggtgttgcatctttcaccatcatat |
100 |
Q |
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| T |
7774882 |
ctaaatttcttagaaatattagtccacagtgaattaaagttgatgtaagaattgaaatgaatataattgtgatatggtgttgcatctttcaccatcatat |
7774783 |
T |
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| Q |
101 |
ctgaatttatgcattttgctgattttatgtttcattcttacttccaacagatttcatcaatgatgcaaagaattagacatagaatcaaaatggttaagct |
200 |
Q |
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| T |
7774782 |
ctgaatttatgcattttgctgattttatgtttcattcttacttccaacagatttcatcaatgatgcaaagaattagacatagaatcaaaatggttaagct |
7774683 |
T |
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| Q |
201 |
aagactaaaagtaaaattccatcttgatttcttgggagcactgtcgctgcctttgtcagactgcgacgaatccatctttctcttgttctctg |
292 |
Q |
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| T |
7774682 |
aagactaaaagtaaaattccatcttgatttcttgggagcactgtcgctgcctttgtcagactgcgacgaatccatctttctcttgttttctg |
7774591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 207 - 279
Target Start/End: Complemental strand, 7779487 - 7779415
Alignment:
| Q |
207 |
aaaagtaaaattccatcttgatttcttgggagcactgtcgctgcctttgtcagactgcgacgaatccatcttt |
279 |
Q |
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| T |
7779487 |
aaaagtaaaattccatcttgatttcttgggagcactgttgcggcctttgtcagactgcgatgaatcgatcttt |
7779415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 7779583 - 7779521
Alignment:
| Q |
143 |
tccaacagatttcatcaatgatgcaaagaattagacatagaatcaaaatggttaagctaagac |
205 |
Q |
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| T |
7779583 |
tccaacagatttcataaatgatgcaaagaattagaaacataatcaaaatggttaagcaaagac |
7779521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 7768911 - 7768822
Alignment:
| Q |
103 |
gaatttatgcattttgctgattttatgtttcattcttacttccaacagatttcatcaatgatgcaaagaattagacatagaatcaaaatggtta |
196 |
Q |
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| T |
7768911 |
gaattcatacattttgctgattctatgtttcactcta----ccaacatacttcatcaatgatgtaaggaattagacatagaatcaaaatggtta |
7768822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 7768447 - 7768391
Alignment:
| Q |
223 |
cttgatttcttgggagcactgtcgctgcctttgtcagactgcgacgaatccatcttt |
279 |
Q |
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| T |
7768447 |
cttgatttcctggaagcactgttgctgcctttgttagactgcgatgaatcaatcttt |
7768391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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