View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9506_low_6 (Length: 272)
Name: NF9506_low_6
Description: NF9506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9506_low_6 |
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| [»] scaffold0617 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 5 - 267
Target Start/End: Original strand, 655302 - 655564
Alignment:
| Q |
5 |
ctgacatgtcaaattcatgcatcattgacatcttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaat |
104 |
Q |
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| T |
655302 |
ctgacatgtcaaattcatgcatcattgacatcttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaat |
655401 |
T |
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| Q |
105 |
taggattttacctccctccttttcttttgtaaagagtgtatgttcagaagcacacctttcgaaaccctctcgaacgaagtaggattctatgcgactggac |
204 |
Q |
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| T |
655402 |
taggattttacctctctccttttcttttgtaaagagtgtatgttcagaagcacacctttcgaaaccctctcgaacgaagtaggattctatgcgactgtac |
655501 |
T |
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| Q |
205 |
catgctcgcggagcctgtttcagtccgtctgaagctttatttagcttatatacctttgcttct |
267 |
Q |
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| T |
655502 |
catgctcgcggagcctgtttcagtccgtataaagctttatttagcttatataccttttcttct |
655564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 14247031 - 14246936
Alignment:
| Q |
24 |
catcattgacatcttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaattaggattttacctcc |
119 |
Q |
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| T |
14247031 |
catcattgagtttttaaactcatcacacatgcttctatcattcccggtaaaaattaaatcatcaacataaaggcttacaattaagagtttacctcc |
14246936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 194
Target Start/End: Complemental strand, 11850614 - 11850427
Alignment:
| Q |
7 |
gacatgtcaaattcatgcatcattgacatcttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaatta |
106 |
Q |
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| T |
11850614 |
gacatgtcaaattctaccatcattgaatttttaaattcatcacacatatttatatcattcccggtatatattaaatcatctacataaagacttactatta |
11850515 |
T |
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| Q |
107 |
ggattttacctccctccttttcttttgtaaagagtgtatgttcagaagcacacctttcgaaaccctctcgaacgaagtaggattctat |
194 |
Q |
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| T |
11850514 |
gaatcttgtttccttcctttgtttttgtaaacaatgtatgttcacaaaaacatttttcaaaaccttctcgaacaaagtatgcttctat |
11850427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 194
Target Start/End: Complemental strand, 5877310 - 5877123
Alignment:
| Q |
7 |
gacatgtcaaattcatgcatcattgacatcttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaatta |
106 |
Q |
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| T |
5877310 |
gacatgtcaaattctaccatcattgaatttttaaattcatcacacatatttatatcattcctggtatatattaaatcatctacataaacacttactatta |
5877211 |
T |
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| Q |
107 |
ggattttacctccctccttttcttttgtaaagagtgtatgttcagaagcacacctttcgaaaccctctcgaacgaagtaggattctat |
194 |
Q |
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| T |
5877210 |
gaatcttgtttccttcctttgtttttgtaaacaatgtatgttcacaaaaacatttttcaaaaccttctcgaacaaagtatgcttctat |
5877123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0617
Description:
Target: scaffold0617; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 964 - 1046
Alignment:
| Q |
37 |
ttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaattaggattttacctcc |
119 |
Q |
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| T |
964 |
ttaaactcatcacacatgcttctatcattcccggtaaaaattaaatcatcaacataaaggcttacaattaagagtttacctcc |
1046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 6408 - 6490
Alignment:
| Q |
37 |
ttaaattcctcacaaatacttttatcattcccagtataaatcaaatcatcaacgtaaagactgacaattaggattttacctcc |
119 |
Q |
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| T |
6408 |
ttaaactcatcacacatgcttctatcattcccggtaaaaattaaatcatcaacataaaggcttacaattaagagtttacctcc |
6490 |
T |
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