View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9507_low_1 (Length: 556)
Name: NF9507_low_1
Description: NF9507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9507_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 16 - 543
Target Start/End: Original strand, 27230357 - 27230884
Alignment:
| Q |
16 |
atactttcatgtctcataactcatgacctaagtcaatagacacaatctattacaaaatataattataataaactatttaaaaaacctaagttgcacttcc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
27230357 |
atactttcatgtctcataactcatgacctaagtcaatagagacaatctattacaaaatataattataataatctatttaaaaaacctaagttgcagatcc |
27230456 |
T |
|
| Q |
116 |
aatagcaggacaaaaagttatatcataactttcagcccctttacattgatacataggaggcttattatcaccagaatatatatgagcattagggcattgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27230457 |
aatagcaggacaaaaagttatatcataactttcagcccctttacattgatacataggaggcttattatcaccagaatatatatgagcattagggcattgt |
27230556 |
T |
|
| Q |
216 |
tgcttaaacttgagtgtatactcatcaagttgacaattattcccattacaacaatgttcatcatccttaaacacatcacaagcactattacaccctacat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27230557 |
tgcttaaacttgagtgtatactcatcaagttgacaattattcccattacaacaatgttcatcatccttaaacacatcacaagcactattacaccctacat |
27230656 |
T |
|
| Q |
316 |
aaaatccattagcattataagctattaaagatggtggacaaacatttccaaaatccatattacaggtcacaactggacatggacctgaaccatccaacaa |
415 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27230657 |
aaagtccattagcattataagctattaaagatggtggacaaacatttccaaaatccatattacaggtcacaactggacatggacctgatccatccaacaa |
27230756 |
T |
|
| Q |
416 |
tgttccaccaacaggtttgatattaacaaaaatattttgtccatgaatcaaacttatttcataggaaacaattgattcgttaacgttgaaattgagaagt |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27230757 |
tgttccaccaacaggtttgatattaacaaaaatattttgtccatgaatcaaacttatttcataggaaacaattgattcgttaacgttgaaattgagaagt |
27230856 |
T |
|
| Q |
516 |
gttacgggataattaggtgttgtgtctg |
543 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
27230857 |
gttacgggataattaggtgttgtgtctg |
27230884 |
T |
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