View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9507_low_12 (Length: 365)
Name: NF9507_low_12
Description: NF9507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9507_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 8467889 - 8467541
Alignment:
| Q |
1 |
aatgaaaccaaaagcttccaaacaaaccaaaacagcttctcatcctccatattttgaggtaattgtttcaaactttcaatatagtttcaaactactggtt |
100 |
Q |
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| T |
8467889 |
aatgaaaccaaaagcttccaaacaaaccaaaacagcttctcatcctccatattttgaggtaattgtttcaaactttcaatatagtttcaaacttctggtt |
8467790 |
T |
|
| Q |
101 |
gatttaagcgtatacttatttatttttgtagatggttaaggaggctttactggctctaaaggagaggaatggctcaagcccttacgctatagcgaaatac |
200 |
Q |
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| T |
8467789 |
gatttaagcgtatacttatttatttttgtagatggttaaggaggctttactggctctaaaggagaggaatggctcaagcccttacgctatagcgaaatac |
8467690 |
T |
|
| Q |
201 |
atggacgagaagttcaagccggtgctcccagcaaatttcaagaagatactaagcttgcagcttaagaatcaaaccaagagagggaagctggtgaagatca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8467689 |
atggacgagaagttcaagccggtgctcccagcaaatttcaagaagatactaagcttgcagcttaagaatcaaaccaagagagggaagctggtgaagatca |
8467590 |
T |
|
| Q |
301 |
aagcttcgtataaactatctgatgccgagaagccgaagaaggagaaaaa |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8467589 |
aagcttcgtataaactatctgatgccgagaagccgaagaaggagaaaaa |
8467541 |
T |
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