View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9507_low_15 (Length: 341)
Name: NF9507_low_15
Description: NF9507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9507_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 25583639 - 25583325
Alignment:
| Q |
18 |
acttgatttccatcatgaaaacaacaactccaaaaggaggaattaactgcatgtttggaattacagtgagtttaacgaaatcacagtagcgccgtcgttt |
117 |
Q |
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| T |
25583639 |
acttgatttccatcatgaaaacaacaactccaaaaggaggaattaactgcatgtttggaattacagtgagtttaacgaaatcacagtagcgccgtcgttt |
25583540 |
T |
|
| Q |
118 |
ggttgaagcttcaaaatgaagtttttgccaaaattacggtaataaaaaactcacagtcaatccaaacatgcattaagtgtaggttaccctgttgccagtt |
217 |
Q |
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| T |
25583539 |
ggttgaagcttcaaaatgtagtttttgccaaaattacggtaataaaaaactcacagtcaatccaaacatgcattaagtgtaggttaccctgttgccagtt |
25583440 |
T |
|
| Q |
218 |
ctgcattctctgttggta--------gtaggacatgttagcttttaacctaggaatctccatttcaatatgtttcatttctattattagttttaatcctt |
309 |
Q |
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| T |
25583439 |
ctgcattctatgttggtagtagcctagtaggacatgttagcttttaacctaggaatctccatttcaatatgtttcatttctattattagttttaatcctt |
25583340 |
T |
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| Q |
310 |
gtttatgtgtcttat |
324 |
Q |
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| T |
25583339 |
gtttatgtgtcttat |
25583325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 41696812 - 41696776
Alignment:
| Q |
65 |
tgcatgtttggaattacagtgagtttaacgaaatcac |
101 |
Q |
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| T |
41696812 |
tgcatgtttggaatgacagtgagtttaacgaaatcac |
41696776 |
T |
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