View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9507_low_16 (Length: 337)
Name: NF9507_low_16
Description: NF9507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9507_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 25 - 326
Target Start/End: Complemental strand, 39964574 - 39964273
Alignment:
| Q |
25 |
gctctttctcctacgatcatgatctaccatcctacacccatcaacaacaacaaaacacaactatataataatattttaaagaaagaaagtgaaaacaaaa |
124 |
Q |
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| T |
39964574 |
gctctttctcctacgatcatgatctaccatcctacacccatcaacaacaacaaaacacaactatataataatattttaaagaaagaaagtgaaaacaaaa |
39964475 |
T |
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| Q |
125 |
tagtgaaataagaggttatagttactcatgagaaagaggaagagggtgcatgatccctgaaagacaaagaggaagaccatgacgaatgtttaacatggat |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39964474 |
tagtgaaataagaggttatagttactcatgagaaagaggaagagggtgcatgatccctgaaagacaaagaggaagaccatgacgaatgtttaacatggat |
39964375 |
T |
|
| Q |
225 |
tgcattatttttggttaatttctttctttgcaacaatagtactttgtaaaggacaacactccttttgttattgttgttgttttgtggtggtgacgtctct |
324 |
Q |
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| T |
39964374 |
tgcattatttttggttaatttctttctttgcaacaatagtactttgtaaaggacaacactccttttgttattgttgttgttttgtggtggtgacgtctct |
39964275 |
T |
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| Q |
325 |
ct |
326 |
Q |
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|| |
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| T |
39964274 |
ct |
39964273 |
T |
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