View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9507_low_19 (Length: 309)
Name: NF9507_low_19
Description: NF9507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9507_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 34201868 - 34201584
Alignment:
| Q |
17 |
agtaggaggtgggaatagtaaccaaaatccaaagtcctatgaatctccaacatcaaagatggaatcagcttacacagttcttcaagcatggaaatctgca |
116 |
Q |
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| T |
34201868 |
agtaggaggtgggaatagtaaccaaaatccaaagtcctatgaatctccaacatcaaagatggaatcagcttacacagttcttcaagcatggaaatctgca |
34201769 |
T |
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| Q |
117 |
atcactgatgaccctttaaagatactagattcttggaatggttcaaatgtatgttcatataaaggaatcttctgtgcaaatcctgaaaatggaataactt |
216 |
Q |
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| T |
34201768 |
atcactgatgaccctttaaagatactagattcttggaatggttcaaatgtatgttcatataaaggaatcttctgtgcaaatcctgaaaatggaataactt |
34201669 |
T |
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| Q |
217 |
ctacaacagcttctacttcagtagttcttgctggaatagatctaaaccatgcaaaccttgaaggaacacttgtacaagaattatc |
301 |
Q |
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| T |
34201668 |
ctacaacagcttctacttcagtagttcttgctggaatagatctaaaccatgcaaaccttgaaggaacacttgtacaagaattatc |
34201584 |
T |
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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 192
Target Start/End: Original strand, 43029966 - 43030063
Alignment:
| Q |
95 |
tcttcaagcatggaaatctgcaatcactgatgaccctttaaagatactagattcttggaatggttcaaatgtatgttcatataaaggaatcttctgtg |
192 |
Q |
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| T |
43029966 |
tcttcaagcttggaaatcttcaatcactgatgaccctttaaagattttagatacatgggttggtcctaatgtttgttcttataaaggaatcttttgtg |
43030063 |
T |
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