View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9507_low_2 (Length: 446)
Name: NF9507_low_2
Description: NF9507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9507_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 10 - 437
Target Start/End: Original strand, 42095392 - 42095823
Alignment:
| Q |
10 |
taaatatagtattattgggagaacacaaaaggggatacaaaccatgaacataaaattgaacaaattaaacaacaaactatcatacggcttatgtcacttt |
109 |
Q |
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| T |
42095392 |
taaatatagtattattgggagaacacaaaaggggatacaaaccatgaacataaaattgaacaaattaaacaacaaactatcatacggcttatgtcacttt |
42095491 |
T |
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| Q |
110 |
tcacaagtat----gtacatagttaacgatgcttggaggcaaagttattaaccaaggcaagtgcattactagtaacttgagaaacaccaacaaccttagc |
205 |
Q |
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| T |
42095492 |
tcacaagtatatatgtaaatagttaacgatgcttggaggcaaagttattaaccaaggcaagtgcattactagtaacttgagaaacaccaacaaccttagc |
42095591 |
T |
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| Q |
206 |
accaattgcagccttcaaattttgatccatatgaggactagaaaagttgtcaacacaagtgttctgatcagtaagagcagcactaacccaagtttgaaca |
305 |
Q |
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| T |
42095592 |
accaattgcagccttcaaattttgatccatatgaggactagaaaagttgtcaacacaagtgttctgatcagtaagagcagcactaacccaagtttgaaca |
42095691 |
T |
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| Q |
306 |
ttacttatatgccaaaccaaatcctctctcttagccttacccaaaagtcctagctccttaaccgatttgttaagacggtccacgctactatccatgtttg |
405 |
Q |
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| T |
42095692 |
ttatttatatgccaaaccaaatcctctcccttagccttacccaaaagtcctagctccttaaccgatttgttaagacggtccacgctactatccatgtttg |
42095791 |
T |
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| Q |
406 |
ctttgcaatcttgcacagcactatattccctt |
437 |
Q |
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| T |
42095792 |
ctttgcaatcttgcacagcactatattccctt |
42095823 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 320
Target Start/End: Original strand, 1665249 - 1665281
Alignment:
| Q |
288 |
ctaacccaagtttgaacattacttatatgccaa |
320 |
Q |
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| T |
1665249 |
ctaacccatgtttgaacattacttatatgccaa |
1665281 |
T |
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