View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9507_low_20 (Length: 294)
Name: NF9507_low_20
Description: NF9507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9507_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 50505377 - 50505104
Alignment:
| Q |
1 |
attttcaacaactttccctttttgctaaagaagttcgacatctgaattagttgatgatgaacggggaaaacctgatttgaatggataacctttgtaccag |
100 |
Q |
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| T |
50505377 |
attttcaacaactttccctttttgctaaagaagttcgacatctgaattagttgatga---acggggaaaacctgatttgaatggttaacctttgtaccag |
50505281 |
T |
|
| Q |
101 |
atctttggtttttatatgcatggttttgactaatttttctcgttctccagcttccacggttggagcatgaattgttacattgagagttgcatgctttatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
50505280 |
atctttggtttttatatgcatggttttgactaatttttctcgttctccagcttccacggttggagcatgaattgttactttgagagttgcatgctttatg |
50505181 |
T |
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| Q |
201 |
tattgaatgtgcacgtaccaaaatgactaccagttacgttctcagcaagtagtgtcgtatgatatttttcgtagttt |
277 |
Q |
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| T |
50505180 |
tattgaatgtgcatgtaccaaaatgactaccagttacgttctcagcaagtagtgtcgtatgatatttttcgtagttt |
50505104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 55280971 - 55281032
Alignment:
| Q |
67 |
aaaacctgatttgaatggataacctttgtaccagatctttggtttttatatgcatggttttg |
128 |
Q |
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| T |
55280971 |
aaaacctgatttgaatggataacctttgtaccagatctttgctttttatatttatggttttg |
55281032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 28733855 - 28733906
Alignment:
| Q |
1 |
attttcaacaactttccctttttgctaaagaagttcgacatctgaattagtt |
52 |
Q |
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||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
28733855 |
attttcaacaacttttcctttttgctaaagaagtttgacatctgaattagtt |
28733906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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