View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9507_low_27 (Length: 246)

Name: NF9507_low_27
Description: NF9507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9507_low_27
NF9507_low_27
[»] chr2 (2 HSPs)
chr2 (19-114)||(19506155-19506250)
chr2 (166-226)||(19506096-19506156)
[»] chr5 (1 HSPs)
chr5 (52-118)||(20568697-20568763)


Alignment Details
Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 19506250 - 19506155
Alignment:
Q  19 aaaattgctaaagcgataaagattacaatcagtttttgtccttctgtgctttcatttacgaaaacaaatttagttttcggcatgaattcggtttcg 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19506250 aaaattgctaaagcgataaagattacaatcagtttttgtccttctgtgcttttatttacgaaaacaaatttagttttcggcatgaattcggtttcg 19506155  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 19506156 - 19506096
Alignment:
Q  166 cgtgcgataagcatatggttatgtcggtttcaatttcacgtatcaatatagagtttaagat 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19506156 cgtgcgataagcatatggttatgtcggtttcaatttcacgtatcaatatagagtttaagat 19506096  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 20568697 - 20568763
Alignment:
Q  52 ttttgtccttctgtgctttcatttacgaaaacaaatttagttttcggcatgaattcggtttcggcta 118  Q
    |||||| |||||||| ||| ||| ||||||| ||||||||||||| || |||||| |||||||||||    
T  20568697 ttttgttcttctgtggtttaattcacgaaaataaatttagttttcagcctgaatttggtttcggcta 20568763  T

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