View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9507_low_33 (Length: 225)
Name: NF9507_low_33
Description: NF9507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9507_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 17184283 - 17184498
Alignment:
| Q |
1 |
agtacatttgaacagctataagttttgaaaccaaaatgtcttacagagacaaatcagattctgaatcaatgaggggtcagtacgcaattttcttataatg |
100 |
Q |
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| T |
17184283 |
agtacatttgaacagctataagttttgaaaccaaaatgtcttacagatacaaatcagattctgaatcaatgaggggtcagtacgcaattttcttataatg |
17184382 |
T |
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| Q |
101 |
attttaaaattttactggtcgaaat---------taagttccttgccattcaattattatattttaatgaaatgaatgatatggaaagaacagtagaagt |
191 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||| ||||| |
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| T |
17184383 |
attttaaatttttactggtcgaaattcttatacataagttccttgccattcaattattatattttaatgagatgaatgatatggaca-aacagtggaagt |
17184481 |
T |
|
| Q |
192 |
gaatgtaaaattgtgtt |
208 |
Q |
| |
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||||||||||||||||| |
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| T |
17184482 |
gaatgtaaaattgtgtt |
17184498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 17196123 - 17195908
Alignment:
| Q |
1 |
agtacatttgaacagctataagttttgaaaccaaaatgtcttacagagacaaatcagattctgaatcaatgaggggtcagtacgcaattttcttataatg |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17196123 |
agtacatttgaacagctataagtcttgaaaccaaaatgtcctacagtgacaaatcagattctgaatcaatgaggggtcagtacgcaattttcttataatg |
17196024 |
T |
|
| Q |
101 |
attttaaaattttactggtcgaaat---------taagttccttgccattcaattattatattttaatgaaatgaatgatatggaaagaacagtagaagt |
191 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||| ||||| |
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| T |
17196023 |
attttaaatttttactggtcgaaattcttatacataagttccttgccattcaattattatattttaatgagatgaatgatatggaca-aacagtggaagt |
17195925 |
T |
|
| Q |
192 |
gaatgtaaaattgtgtt |
208 |
Q |
| |
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||||||||||||||||| |
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| T |
17195924 |
gaatgtaaaattgtgtt |
17195908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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