View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9507_low_4 (Length: 397)
Name: NF9507_low_4
Description: NF9507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9507_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 183 - 379
Target Start/End: Complemental strand, 48888367 - 48888171
Alignment:
| Q |
183 |
ggtgattaagctctcaagaatgttaaaccagtacagaatcgatttcacattgcaatcttatatacaattctggccaaaagaaaaaagacgaaatttttat |
282 |
Q |
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| T |
48888367 |
ggtgattaagctctcaacaatgttaaaccagtacagaatcgatttcacattgcaatcttatatacaattctggccaaaagaaaaaagacgaaatttttat |
48888268 |
T |
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| Q |
283 |
caatgtcaacataataaaacagtaacattcaaacacaacctggagttcacctgtttactgtcaggactccaactaactgcatatatgctgcccttgt |
379 |
Q |
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| T |
48888267 |
caatgtcaacataataaaacagtaacattcaaacacaacctggagttcacctgtttactgtcacgactccaactaactgcatatatgctgcccttgt |
48888171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 48888536 - 48888425
Alignment:
| Q |
13 |
agcagagacagtaagaacctgtaannnnnnnnacttaatttaaactagaatgtaaatagcagcactgaacatctaaaatagcacaaataaattcataaca |
112 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
48888536 |
agcagagacagtaagaacctgtaattttttttacttaatttaaactagaatgtaaatagcagtactgaacatctaaaatagcacaaataaattcataaca |
48888437 |
T |
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| Q |
113 |
tgttcctcctta |
124 |
Q |
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| T |
48888436 |
tgttcctcctta |
48888425 |
T |
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