View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9507_low_6 (Length: 384)
Name: NF9507_low_6
Description: NF9507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9507_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 270
Target Start/End: Complemental strand, 3482080 - 3481827
Alignment:
| Q |
8 |
ttggtgttgatcagatcgatgttaagaaatgtaaagaaagagggattcgtgtgacgattactccagatgttttgacagatgaagttgctgatttggctat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3482080 |
ttggtgttgatcagatcgatgttaagaaatgtaaagaaagagggattcgtgtgacgattactccagatgttttgacagatgaagttgctgatttggctat |
3481981 |
T |
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| Q |
108 |
tggtttgattctttcacttcttagaaggatttcggaatgtgatcgatttgttaggaatgggaattggaaacatggtgattataaattgaccactaaggta |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
3481980 |
tggtttgattctttcacttcttagaaggatttcggaatgtgatcgatttgttaggaatgggaattggaaac---------atcaattgaccactaaggta |
3481890 |
T |
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| Q |
208 |
aaccaagtttctaaattgatgtcgattttctacgaatgttatagcagtgcctctatttgagaa |
270 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3481889 |
aaccaagtttctaaattgatgtcgattttctaggaatgttatagcagtgcctctatttgagaa |
3481827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 3501554 - 3501337
Alignment:
| Q |
8 |
ttggtgttgatcagatcgatgttaagaaatgtaaagaaagagggattcgtgtgacgattactccagatgttttgacagatgaagttgctgatttggctat |
107 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |
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| T |
3501554 |
ttggtgttgatcagatcgatgttaagaaatgtaaggaaagagggattcgtgtgacgattactcctgatgttttgactgatgatgttgctgatttggctat |
3501455 |
T |
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| Q |
108 |
tggtttgattctttcacttcttagaaggatttcggaatgtgatcgatttgttaggaatgggaattggaaacatggtgattataaattgaccactaaggta |
207 |
Q |
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| T |
3501454 |
tggattgattcttacacttcttagaaagatttcggaatgcgatccatatgttagaagagggaattggaaacatggtgattataagttgaccactaaggta |
3501355 |
T |
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| Q |
208 |
aaccaagtttctaaattg |
225 |
Q |
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|||||||||||||||||| |
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| T |
3501354 |
aaccaagtttctaaattg |
3501337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 262 - 366
Target Start/End: Complemental strand, 3481653 - 3481549
Alignment:
| Q |
262 |
atttgagaacattttttagtactatactgtattgtgaaacaatagtgaactgttcaattgctattcttaataaccatggttttagtctcaagtcttgttg |
361 |
Q |
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|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3481653 |
atttgagaacattttttaatactatactgtattgtaaaacaatagtgaactgttcaattgctattcttaataaccatggttttagtcttaagtcttgttg |
3481554 |
T |
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| Q |
362 |
cgttt |
366 |
Q |
| |
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||||| |
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| T |
3481553 |
cgttt |
3481549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 48 - 211
Target Start/End: Complemental strand, 3524964 - 3524801
Alignment:
| Q |
48 |
agggattcgtgtgacgattactccagatgttttgacagatgaagttgctgatttggctattggtttgattctttcacttcttagaaggatttcggaatgt |
147 |
Q |
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||||||||| ||||||| ||| || ||||||||||| |||||||||||||||||||||||||||||||| ||| | |||||||||||||||| |||||| |
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| T |
3524964 |
agggattcgcgtgacgaatacacctgatgttttgactgatgaagttgctgatttggctattggtttgatgcttacgcttcttagaaggatttgtgaatgt |
3524865 |
T |
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| Q |
148 |
gatcgatttgttaggaatgggaattggaaacatggtgattataaattgaccactaaggtaaacc |
211 |
Q |
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||||| | |||||| ||| |||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
3524864 |
gatcgttatgttagaggtggaaattggaagcatggtgattataaattgaccacaaaggtaaacc |
3524801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 209
Target Start/End: Complemental strand, 3521492 - 3521291
Alignment:
| Q |
8 |
ttggtgttgatcagatcgatgttaagaaatgtaaagaaagagggattcgtgtgacgattactccagatgttttgacagatgaagttgctgatttggctat |
107 |
Q |
| |
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|||||||||| |||| ||| |||| || ||||| || | ||||||| ||||||||| ||| || ||||| ||||| ||||| ||||||||||| ||||| |
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| T |
3521492 |
ttggtgttgacaagattgatcttaacaagtgtaaggagaaagggatttgtgtgacgaatacacctgatgtgttgactgatgatgttgctgatttagctat |
3521393 |
T |
|
| Q |
108 |
tggtttgattctttcacttcttagaaggatttcggaatgtgatcgatttgttaggaatgggaattggaaacatggtgattataaattgaccactaaggta |
207 |
Q |
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||||||||| ||| |||||||||| ||||||| |||||||||||||||||||| | ||| | ||||| |||||||| ||||| ||||||||||||||| |
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| T |
3521392 |
tggtttgatgcttacacttcttaggaggatttgtgaatgtgatcgatttgttagaagtggagactggaagcatggtgactataagttgaccactaaggta |
3521293 |
T |
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| Q |
208 |
aa |
209 |
Q |
| |
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|| |
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| T |
3521292 |
aa |
3521291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 244 - 366
Target Start/End: Complemental strand, 3501257 - 3501137
Alignment:
| Q |
244 |
tgttatagcagtgcctctatttgagaacattttttagtactatactgtattgtgaaacaatagtgaactgttcaattgctattcttaataaccatggttt |
343 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
3501257 |
tgttatagcagtgcctttatttgagaacattttttagtactataca--attaagaaacaatagtgatttgttcaattgctattcttaataaccatagttt |
3501160 |
T |
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| Q |
344 |
tagtctcaagtcttgttgcgttt |
366 |
Q |
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|||||| ||||||| ||| |||| |
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| T |
3501159 |
tagtcttaagtcttattgtgttt |
3501137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 209
Target Start/End: Original strand, 3534785 - 3534986
Alignment:
| Q |
8 |
ttggtgttgatcagatcgatgttaagaaatgtaaagaaagagggattcgtgtgacgattactccagatgttttgacagatgaagttgctgatttggctat |
107 |
Q |
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||||||||||| ||| ||| |||| | ||||| || | ||||||||| || |||| ||| || ||||| ||||| ||||| ||||||||||||||||| |
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| T |
3534785 |
ttggtgttgatatgattgatcttaacatgtgtaaggagaaagggattcgcgtaacgaatacacctgatgtgttgactgatgatgttgctgatttggctat |
3534884 |
T |
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| Q |
108 |
tggtttgattctttcacttcttagaaggatttcggaatgtgatcgatttgttaggaatgggaattggaaacatggtgattataaattgaccactaaggta |
207 |
Q |
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| ||||||| ||| | |||||| | ||||||| ||||||||||||||||||||| | ||| |||||||| | ||||||||||| ||||| ||||||||| |
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| T |
3534885 |
ttgtttgatccttacgcttcttcggaggattttggaatgtgatcgatttgttagaagtggaaattggaagcgcggtgattataagttgacaactaaggta |
3534984 |
T |
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| Q |
208 |
aa |
209 |
Q |
| |
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|| |
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| T |
3534985 |
aa |
3534986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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