View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9507_low_8 (Length: 384)
Name: NF9507_low_8
Description: NF9507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9507_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 47476570 - 47476202
Alignment:
| Q |
11 |
cgagtttcgtggtatagcattttagtagttgaattgaaagtgtgtttctcttgcttgccatagaattactattaagacatgccaattatgcaatagcatt |
110 |
Q |
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| T |
47476570 |
cgagcttcatggtatagcattttagtagttgaattgaaagtgtgtttctcttgcttgccatagaattactattaagacatgccaattatgcaatagcatt |
47476471 |
T |
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| Q |
111 |
gatcaaatcttaatcatgaattaaatattgattgctttgttgtcttattttgtaaacaaacaaatgcttgcttttttaaacttgagtaatgatacagggg |
210 |
Q |
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| T |
47476470 |
gatcaaatcttaatcatgaattaaatattgattgctttgttgtcttattttgtaaacaaacaaatgcttgcttttttaaacttgagtaatgatacagggg |
47476371 |
T |
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| Q |
211 |
atatcatctttatctgttttttctcac-------------aaagtcttctataaaattaaggacctttcctttttaaaaaatttatgttgttttctgatg |
297 |
Q |
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| T |
47476370 |
atatcatccttatctgttttttctcacatgaatgatgtttaaagtcttctataaaattaaggacctttcctttttaaaaaatttatgttgttttctgatg |
47476271 |
T |
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| Q |
298 |
attatttcacttatcagacttcttttccccgcttccaagctgagaacttggtcaagaacaaggttatat |
366 |
Q |
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| T |
47476270 |
attatttcacttatcagacttcttttccccgcttccaagctgagaacttggtcaagaacaaggttatat |
47476202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 72 - 366
Target Start/End: Complemental strand, 24802612 - 24802305
Alignment:
| Q |
72 |
agaattactattaagacatgccaattatgcaatagcattgatcaaatcttaatcatgaattaaatattgattgctttgttgtcttattttgtaaacaaac |
171 |
Q |
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| T |
24802612 |
agaattactattaagacatgccaattatgcaatagcattgatcaaatcttaatcatgaattaaatattgattgctttgttgtcttattttgtaaacaaac |
24802513 |
T |
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| Q |
172 |
aaatgcttgcttttttaaacttgagtaatgatacaggggatatcatctttatctgttttttctcac-------------aaagtcttctataaaattaag |
258 |
Q |
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| T |
24802512 |
aaatgcttgcttttttaaacttgagtaatgatacaggggatatcatccttatctgttttttctcacatgaatgatgtttaaagtcttctataaaattaag |
24802413 |
T |
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| Q |
259 |
gacctttcctttttaaaaaatttatgttgttttctgatgattatttcacttatcagacttcttttccccgcttccaagctgagaacttggtcaagaacaa |
358 |
Q |
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| T |
24802412 |
gacctttcctttttaaaaaatttatgttgttttctaatgattatttcacttatcagacttcttttccccgcttccaagctgagaacttggtcaagaacaa |
24802313 |
T |
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| Q |
359 |
ggttatat |
366 |
Q |
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|||||||| |
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| T |
24802312 |
ggttatat |
24802305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 108 - 358
Target Start/End: Complemental strand, 47473219 - 47472957
Alignment:
| Q |
108 |
attgatcaaatcttaatcatgaattaaatattgattgctttgttgtcttattttgtaaacaaacaaatgcttgcttttttaaacttgagtaatgatacag |
207 |
Q |
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||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
47473219 |
attgatcaaatcttaatcatgtattaaatattggttggtttgttgtcttattttgtaaacaaacaaatgcatgcttttttaaactagagtaatgatacag |
47473120 |
T |
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| Q |
208 |
gggatatcatctttatctgtt-ttttctca-----------caaagtcttctataaaattaaggacctttcctttttaaaaaatttatgttgttttctga |
295 |
Q |
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| T |
47473119 |
ggaatatcatccttatctgtttttttctcacataaatgatgcaaagtcttttataaaattaatgccctttccttttttaaaagtgtatgttattttctga |
47473020 |
T |
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| Q |
296 |
tgattatttcacttatcagacttcttttccccgcttccaagctgagaacttggtcaagaacaa |
358 |
Q |
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| | |||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
47473019 |
taaatatttcgcttatcagacttctcatccccgcttccaagctgagaacttgaacaagaacaa |
47472957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 47485980 - 47485908
Alignment:
| Q |
94 |
aattatgcaatagcattgatcaaatcttaatcatgaattaaatattgattgctttgttgtcttattttgtaaa |
166 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||| | ||||||||||| |
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| T |
47485980 |
aattatgtaatagcattgatcaaatcttaatcatgaattaaatattggttgctctgttggcgtattttgtaaa |
47485908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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