View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9508_high_2 (Length: 249)
Name: NF9508_high_2
Description: NF9508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9508_high_2 |
 | |
|
| [»] chr6 (4 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 8870821 - 8871057
Alignment:
| Q |
13 |
actcaagaaaaaagaaccaaagactttcaacatctgcctcattaaaaacctccttaaaatagcccaatgacataaaatgtgtttggtaaaaaagtaaaag |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||| |||||| |
|
|
| T |
8870821 |
actcaagaaaaaagaaccaaagactttcaacatctgcctcattaaaaaccttcttaaaatagccctatgacataaaatgtctttggtaaaaaaataaaag |
8870920 |
T |
|
| Q |
113 |
tgtagagcaactaaacaacacaaagacaagataaacaacataaatcaaagtccaaggaaaattattaatacaccgattttatgacatacaaatagtttat |
212 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8870921 |
tgtagagcaactaaccaacacaaagacaagataaacaacataaatcaaagtccaaggaaaattattaatataccgattttatgacatacaaatagtttat |
8871020 |
T |
|
| Q |
213 |
aattttataagtaaattaaaatatagcaatacattat |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8871021 |
aattttataagtaaattaaaatatagcaatacattat |
8871057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 8865114 - 8865356
Alignment:
| Q |
13 |
actcaagaaaaaagaaccaaagactttcaacatctgcctcattaaaaacctccttaaaatagcccaatgacataaaatg--tgtttggtaaaa----aag |
106 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||| |||||| || |
|
|
| T |
8865114 |
actcaagaaaaaagaaccaaagattttcaacatctgcctcattaaaaaccttcttaaaatagcccaataacataaaatgcaagtttcgtaaaaaaataaa |
8865213 |
T |
|
| Q |
107 |
taaaagtgtagagcaactaaacaacacaaagacaagataaacaacataaatcaaagtccaaggaaaattattaatacaccgattttatgacatacaaata |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8865214 |
taaaagtgtagagcaactaaacaacacaaagacaagataaacaacataaatcaaagtccaaggaaaattattaatataccgattttatgacatacaaata |
8865313 |
T |
|
| Q |
207 |
gtttataattttataagtaaattaaaatatagcaatacattat |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8865314 |
gtttataattttataagtaaattaaaatatagcaatacattat |
8865356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 127 - 249
Target Start/End: Complemental strand, 8919341 - 8919222
Alignment:
| Q |
127 |
acaacacaaagacaagataaacaacataaatcaaagtccaaggaaaattattaatacaccgattttatgacatacaaatagtttataattttataagtaa |
226 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| | |||||||||| | |||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
8919341 |
acaacacaaagacaagataaaca---taaatcaaagtccaagaataattattaatgtatgaattttatgacatacaaatagttcatacttttataagtaa |
8919245 |
T |
|
| Q |
227 |
attaaaatatagcaatacattat |
249 |
Q |
| |
|
|||||||||||| |||||||||| |
|
|
| T |
8919244 |
attaaaatatagtaatacattat |
8919222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 8919429 - 8919354
Alignment:
| Q |
13 |
actcaagaaaaaagaaccaaagactttcaacatctgcctcattaaaaacctccttaaaatagcccaatgacataaaatg |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| |||||||| |
|
|
| T |
8919429 |
actcaagaaaaaagaaccaaagactttcaacttctgcctcattaaaaa---ccttagaatagcccaatgtgataaaatg |
8919354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University