View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9508_low_1 (Length: 629)
Name: NF9508_low_1
Description: NF9508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9508_low_1 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 235 - 613
Target Start/End: Original strand, 47917360 - 47917737
Alignment:
| Q |
235 |
tagtgatcaaaatcatgcatttcccctttattatgaatgatcattttggcttcactatatttgaccaacttgaatgtaattgatggatataagtttttct |
334 |
Q |
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| T |
47917360 |
tagtgatcaaaatcatgcatttcccctttattatgaatgaccattttggcttcactatatttgaccaacttgaatgtaattgatggatataagtttttct |
47917459 |
T |
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| Q |
335 |
cttctctctctcgcgnnnnnnnnnnaattgcttttgccattatatattaaatgcaatagaagaatggaaatttgattaaagttttagggctgattttgga |
434 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47917460 |
cttctctctctcgcgttttttttt-aattgcttttgccattatatattaaatgcaatagaagaatggaaatttgattaaagttttagagctgattttgga |
47917558 |
T |
|
| Q |
435 |
gaagcaaatcttgtttgcatctgtttattagatcttgcttgtgattgtgaagtcttgaatagaactatcaaatttaccatattatatcagcttgctttat |
534 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47917559 |
gaagcaaatcttgtttgcatctgtttattagatcttgcttgtgattgtgaagtcttgaatagaactatcaaatttaccatattatatcagcttgctttat |
47917658 |
T |
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| Q |
535 |
gtactgcttttaattctaataaagttcaacaatgcaattagtcattgacttgaaagtttaatgccacatgtgtgttctg |
613 |
Q |
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| T |
47917659 |
gtactgcttttaattctaataaagttcaacaatgcaattagtcattgacttgaaagtttaatgccacatgtgtgttctg |
47917737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 47917126 - 47917294
Alignment:
| Q |
1 |
tatggttttggtaatgcaatgtggccaaaggaaggggacttgggaaatggaaaagatggtcatgtttctgagccaagtgaattgatgagccgacaataga |
100 |
Q |
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| T |
47917126 |
tatggttttggtaatgcaatgtggccaaaggaaggggatttgggaaatggaaaagatggtcatgtttctgagccaagtgaattgatgagccgacaatgga |
47917225 |
T |
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| Q |
101 |
ggccactaacaaggaagattacgatacctgctgctgttctaagcccatatcggtaccaagcctcgcttc |
169 |
Q |
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| T |
47917226 |
ggccactaacaaggaagattaagatacctgctgctgttctaagcccatatcggtaccaagcctcgcttc |
47917294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 3e-62; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 312 - 614
Target Start/End: Complemental strand, 29919798 - 29919492
Alignment:
| Q |
312 |
aattgatggatataagtttttctcttctctctctcgcgnnnnnnnnnnaattgcttttgccattatatattaaatgcaatagaagaatggaaatttgatt |
411 |
Q |
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|||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||| || | |||||||||||||||||| ||| |
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| T |
29919798 |
aattgatggataaaagtttttctcttctctctctcg--ttcttgatttaaatgcttttgtcattatatattgaaagtaatagaagaatggaaattggatg |
29919701 |
T |
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| Q |
412 |
aaagttttagggctgatt---------ttggagaagcaaatcttgtttgcatctgtttattagatcttgcttgtgattgtgaagtcttgaatagaactat |
502 |
Q |
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| T |
29919700 |
gaagttttagggctgattcagatgattttggagaagcaa-tctggtttgcatctgtttattagatcttgcatgtgattgtgtagtcttcaataacactat |
29919602 |
T |
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| Q |
503 |
caaatttaccatattatatcagcttgctttatgtactgcttttaattctaataaagttcaacaatgcaa-ttagtcattgacttgaaagtttaatgccac |
601 |
Q |
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| T |
29919601 |
taaatttaccatattatttcagcttgctttatgtactgcttgtaattc---taaggttcaacaatgcaatttggtcattgacttgaaagttgaatgccgc |
29919505 |
T |
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| Q |
602 |
atgtgtgttctga |
614 |
Q |
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| T |
29919504 |
atgtgtgttctga |
29919492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 29920148 - 29919985
Alignment:
| Q |
1 |
tatggttttggtaatgcaatgtggccaaaggaaggggacttgggaaatggaaaagatggtcatgtttctgagccaagtgaattgatgagccgacaataga |
100 |
Q |
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||||||| |||||||||||| |||||||||||||| || || ||||||||||||||||| ||||||||||||||| ||||||||||||||||| || || |
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| T |
29920148 |
tatggttatggtaatgcaatatggccaaaggaaggagatttcggaaatggaaaagatggcgatgtttctgagccaactgaattgatgagccgaccatgga |
29920049 |
T |
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| Q |
101 |
ggccactaacaaggaagattacgatacctgctgctgttctaagcccatatcggtaccaagcctc |
164 |
Q |
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| T |
29920048 |
ggccactaacaaggaagttgaagatacctgctgctgttctcagcccatatcggtaccaagcctc |
29919985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 29919903 - 29919828
Alignment:
| Q |
235 |
tagtgatcaaaatcatgcatttcccctttattatgaatgatcattttggcttcactatatttgaccaacttgaatg |
310 |
Q |
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||||||||||| ||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||| ||||||| |
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| T |
29919903 |
tagtgatcaaagtcatgcacttcccctttattctgattgaccattttggcttcactatatttgaccaatttgaatg |
29919828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 53965 - 53929
Alignment:
| Q |
123 |
gatacctgctgctgttctaagcccatatcggtaccaa |
159 |
Q |
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| T |
53965 |
gataccttctgctgttctcagcccatatcggtaccaa |
53929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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