View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9508_low_5 (Length: 265)
Name: NF9508_low_5
Description: NF9508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9508_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 8695823 - 8696069
Alignment:
| Q |
1 |
aaagtatgattaaagattttcatggcttcttggaagttctagctgcttcttgctgatacctagtagcataactatgaaacaaagcgagtgcgttactggt |
100 |
Q |
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| T |
8695823 |
aaagtatgattaaagattttcatggcttcttggaagttctagctgcttcttgtcgataccttgtagcataactttgaaacaaagcaagtgcgttactagt |
8695922 |
T |
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| Q |
101 |
aacttctgcaacattcttcgccttaatcttaatcgtcgcaactcttttgctcatcctatgaccagggaatgattgtacacaactactagcgtcggttaag |
200 |
Q |
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| T |
8695923 |
aacttctgcaacattcttcgccttcaccttaatcgtcgcaaccctcttgctcattctatgaccagggaacgattgcacacaactactagcgtcggttaag |
8696022 |
T |
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| Q |
201 |
gcagtgctaacccatgtctcaacattacttatgtgccacaacacttt |
247 |
Q |
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| T |
8696023 |
gcagtgctaacccatgtctcaacattacttatgtgccacaacacttt |
8696069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 8687270 - 8687500
Alignment:
| Q |
17 |
ttttcatggcttcttggaagttctagctgcttcttgctgatacctagtagcataactatgaaacaaagcgagtgcgttactggtaacttctgcaacattc |
116 |
Q |
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| T |
8687270 |
ttttcatggcttcttgacggttctagccgctgcttgtcgatacctagtagcataactttgaaacaaagcaagtgcattactagttacttctgcaacattc |
8687369 |
T |
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| Q |
117 |
ttcgccttaatcttaatcgtcgcaactcttttgctcatcctatgaccagggaatgattgtacacaactactagcgtcggttaaggcagtgctaacccatg |
216 |
Q |
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| T |
8687370 |
ttcgccttcaccttaatcgtcgcaactcttttgctcattctatgaccagggaacgattgcacacaactactagcgtcggttaaggcagtgctaacccatg |
8687469 |
T |
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| Q |
217 |
tctcaacattacttatgtgccacaacacttt |
247 |
Q |
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| T |
8687470 |
tctcaacattacttatgtgccacaacacttt |
8687500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 10 - 247
Target Start/End: Complemental strand, 8693437 - 8693197
Alignment:
| Q |
10 |
ttaaagattttcatggcttcttggaagttctagctg---cttcttgctgatacctagtagcataactatgaaacaaagcgagtgcgttactggtaacttc |
106 |
Q |
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| T |
8693437 |
ttaaagtttttcatggcttcttcgaagttctagccgtggctgcttgtcgataccttgtagcataactttgaaacaaagcaagtgcattactagttacttc |
8693338 |
T |
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| Q |
107 |
tgcaacattcttcgccttaatcttaatcgtcgcaactcttttgctcatcctatgaccagggaatgattgtacacaactactagcgtcggttaaggcagtg |
206 |
Q |
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| T |
8693337 |
tgcaacattcttcgccttaaccttaatcgtcgcaacactattgctcattctatgaccagggaacgattgcacacaactactagcatcggttaaggcagtg |
8693238 |
T |
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| Q |
207 |
ctaacccatgtctcaacattacttatgtgccacaacacttt |
247 |
Q |
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| T |
8693237 |
ctaacccatgtctcaacattacttatgtgccacaacacttt |
8693197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 8675204 - 8674966
Alignment:
| Q |
12 |
aaagattttcatggcttcttggaagttctagctg---cttcttgctgatacctagtagcataactatgaaacaaagcgagtgcgttactggtaacttctg |
108 |
Q |
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|||| |||||||||||||||| ||||||||| | || |||| ||||||| ||||||||||| ||||||||||| ||||| ||||| || ||||||| |
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| T |
8675204 |
aaagtttttcatggcttcttgacagttctagccgtggctgcttgtcgataccttgtagcataactttgaaacaaagcaagtgcattactagttacttctg |
8675105 |
T |
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| Q |
109 |
caacattcttcgccttaatcttaatcgtcgcaactcttttgctcatcctatgaccagggaatgattgtacacaactactagcgtcggttaaggcagtgct |
208 |
Q |
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| T |
8675104 |
caacattcttcgccttaaccttaatcgtcgcaaccctcttgctcattctatgaccagggaacgattgcacacaactactagcgtcggttaaggcagtgct |
8675005 |
T |
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| Q |
209 |
aacccatgtctcaacattacttatgtgccacaacacttt |
247 |
Q |
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| T |
8675004 |
aacccatgtctcaacattacttatgtgccacaacacttt |
8674966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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