View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9509_high_1 (Length: 394)
Name: NF9509_high_1
Description: NF9509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9509_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 175 - 376
Target Start/End: Original strand, 8534752 - 8534953
Alignment:
| Q |
175 |
gtgtccatgagaatgattggaagtaaaggtgatgcttgtgtgattttggaaaggagttgttgagtagtgaaagcaagaacaggtttggaatcagcgatct |
274 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8534752 |
gtgtccatgagaatgattggaagtgaaggtgatgcttgggtgattttggaaaggagttgttgagtagtgaaagcaagaacaggtttggaatcagcaatct |
8534851 |
T |
|
| Q |
275 |
gtttagcaatttcaccagatgtattgagaggattggtggtggtgatgatagcgccgagggacatgacggagagacagacaacagggaaatagatggagtt |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8534852 |
gtttagcaatttcaccagatgtattgagaggattggtggtggtgatgatagcgccgagggacatgacggagagacagacaacagggaaatagatggagtt |
8534951 |
T |
|
| Q |
375 |
gg |
376 |
Q |
| |
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|| |
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| T |
8534952 |
gg |
8534953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 175 - 376
Target Start/End: Original strand, 8599991 - 8600192
Alignment:
| Q |
175 |
gtgtccatgagaatgattggaagtaaaggtgatgcttgtgtgattttggaaaggagttgttgagtagtgaaagcaagaacaggtttggaatcagcgatct |
274 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8599991 |
gtgtccatgagaatgattggaagtgaaggtgatgcttgggtgattttggaaaggagttgttgagtagtgaaagcaagaacaggtttggaatcagcaatct |
8600090 |
T |
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| Q |
275 |
gtttagcaatttcaccagatgtattgagaggattggtggtggtgatgatagcgccgagggacatgacggagagacagacaacagggaaatagatggagtt |
374 |
Q |
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| T |
8600091 |
gtttagcaatttcaccagatgtattgagaggattggtggtggtgatgatagcgccgagggacatgacggagagacagacaacagggaaatagatggagtt |
8600190 |
T |
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| Q |
375 |
gg |
376 |
Q |
| |
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|| |
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| T |
8600191 |
gg |
8600192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 175 - 376
Target Start/End: Complemental strand, 8613435 - 8613234
Alignment:
| Q |
175 |
gtgtccatgagaatgattggaagtaaaggtgatgcttgtgtgattttggaaaggagttgttgagtagtgaaagcaagaacaggtttggaatcagcgatct |
274 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8613435 |
gtgtccatgagaatgattggaagtgaaggtgatgcttgggtgattttggaaaggagttgttgagtagtgaaagcaagaacaggtttggaatcagcaatct |
8613336 |
T |
|
| Q |
275 |
gtttagcaatttcaccagatgtattgagaggattggtggtggtgatgatagcgccgagggacatgacggagagacagacaacagggaaatagatggagtt |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8613335 |
gtttagcaatttcaccagatgtattgagaggattggtggtggtgatgatagcgccgagggacatgacggagagacagacaacagggaaatagatggagtt |
8613236 |
T |
|
| Q |
375 |
gg |
376 |
Q |
| |
|
|| |
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|
| T |
8613235 |
gg |
8613234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 230 - 376
Target Start/End: Complemental strand, 8548141 - 8547995
Alignment:
| Q |
230 |
gttgttgagtagtgaaagcaagaacaggtttggaatcagcgatctgtttagcaatttcaccagatgtattgagaggattggtggtggtgatgatagcgcc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8548141 |
gttgttgagtagtgaaagcaagaacaggtttggaatcagcaatctgtttagcaatttcaccagatgtattgagaggattggtggtggtgatgatagcgcc |
8548042 |
T |
|
| Q |
330 |
gagggacatgacggagagacagacaacagggaaatagatggagttgg |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8548041 |
gagggacatgacggagagacagacaacagggaaatagatggagttgg |
8547995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 8534574 - 8534702
Alignment:
| Q |
3 |
gtgggtagataatactcctttgcttggtcctgttgttcctgatgagtagagtaatgtggctgtgtcattctggttgacgcgctcagtcactctattcaac |
102 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8534574 |
gtgggaagatactactcctttgcttggtcctgttgttcctgatgagtagagtaatgtggctgtgtcattctggttgacgcgctcagtcactctactcaac |
8534673 |
T |
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| Q |
103 |
tcaggttctttcttcatcatttcatccag |
131 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
8534674 |
tcaggttctttcttcatcatttcatccag |
8534702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 8599813 - 8599941
Alignment:
| Q |
3 |
gtgggtagataatactcctttgcttggtcctgttgttcctgatgagtagagtaatgtggctgtgtcattctggttgacgcgctcagtcactctattcaac |
102 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8599813 |
gtgggaagatactactcctttgcttggtcctgttgttcctgatgagtagagtaatgtggctgtgtcattctggttgacgcgctcagtcactctactcaac |
8599912 |
T |
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| Q |
103 |
tcaggttctttcttcatcatttcatccag |
131 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
8599913 |
tcaggttctttcttcatcatttcatccag |
8599941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 8613613 - 8613485
Alignment:
| Q |
3 |
gtgggtagataatactcctttgcttggtcctgttgttcctgatgagtagagtaatgtggctgtgtcattctggttgacgcgctcagtcactctattcaac |
102 |
Q |
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|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8613613 |
gtgggaagatactactcctttgcttggtcctgttgttcctgatgagtagagtaatgtggctgtgtcattctggttgacgcgctcagtcactctactcaac |
8613514 |
T |
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| Q |
103 |
tcaggttctttcttcatcatttcatccag |
131 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
8613513 |
tcaggttctttcttcatcatttcatccag |
8613485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 253 - 374
Target Start/End: Original strand, 14752501 - 14752622
Alignment:
| Q |
253 |
acaggtttggaatcagcgatctgtttagcaatttcaccagatgtattgagaggattggtggtggtgatgatagcgccgagggacatgacggagagacaga |
352 |
Q |
| |
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|||||||||||||| |||||||| || || |||||| ||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||| | |
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| T |
14752501 |
acaggtttggaatccgcgatctgcttcgcgatttcatgtactgtgttgaggggattggtggtggtgatgatggcgccgagggacatgacactgagacaca |
14752600 |
T |
|
| Q |
353 |
caacagggaaatagatggagtt |
374 |
Q |
| |
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| |||||||| || |||||||| |
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| T |
14752601 |
ccacagggaagtaaatggagtt |
14752622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 14752233 - 14752292
Alignment:
| Q |
9 |
agataatactcctttgcttggtcctgttgttcctgatgagtagagtaatgtggctgtgtc |
68 |
Q |
| |
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||||| ||||||||||||||||||||||||||| ||||||||||||| || |||||||| |
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| T |
14752233 |
agatactactcctttgcttggtcctgttgttccagatgagtagagtagagtagctgtgtc |
14752292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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